Master index
| Master index |
Index for brede |
 brede | brede - Main function |
| brede_air | brede_air - Roger Woods AIR file |
| brede_bdb | brede_bdb - Read and store Brede database |
| brede_bib | brede_bib - Overview of 'bib' function' |
| brede_bib_ac2bib | brede_bib_ac2bib - Convert Academic Press to Bib struct |
| brede_bib_asymmetry | brede_bib_asymmetry - Compute asymmetry for 'bib' |
| brede_bib_author2author | brede_bib_author2author - Convert author field in 'bib' structure |
| brede_bib_author2txt | brede_bib_author2txt - Convert author field in 'bib' structure to text |
| brede_bib_authors2html | brede_bib_authors2html - Convert authors to HTML |
| brede_bib_bib2bib | brede_bib_bib2bib - Regularize Bib structure |
| brede_bib_bib2bibtex | brede_bib_bib2bibtex - Convert 'bib' structure to BibTeX |
| brede_bib_bib2citekey | brede_bib_bib2citekey - Generate BibTeX key from 'bib' structure |
| brede_bib_bib2exp | brede_bib_bib2exp - Convert 'bib' structure to 'exp' structure |
| brede_bib_bib2html | brede_bib_bib2html - Convert 'Bib' structure to HTML |
| brede_bib_bib2html_author | brede_bib_bib2html_author - Write author index to HTML file |
| brede_bib_bib2html_fmridcid | brede_bib_bib2html_fmridcid - Index for Hammers field |
| brede_bib_bib2html_stat | brede_bib_bib2html_stat - Generate HTML with descriptive statistics |
| brede_bib_bib2loc | brede_bib_bib2loc - Convert 'bib' to 'loc' |
| brede_bib_bib2mat | brede_bib_bib2mat - Generate matrix from 'Bib' structure |
| brede_bib_bib2pmid | brede_bib_bib2pmid - Get Pubmed PMID from bib structure |
| brede_bib_bib2str | brede_bib_bib2str - Convert 'bib' to string. |
| brede_bib_bib2tex | brede_bib_bib2tex - Construct LaTeX from 'bib' structure |
| brede_bib_bib2vcard | brede_bib_bib2vcard - Convert bib structure to vCard |
| brede_bib_bib2vol | brede_bib_bib2vol - Convert a 'bib' structure to a 'vol' |
| brede_bib_cell2struct | brede_bib_cell2struct - Convert 'Bib' cell arrays to structures |
| brede_bib_getfield | brede_bib_getfield - Get a field from a 'Bib' structure |
| brede_bib_journal2journal | brede_bib_journal2journal - Convert journal field in 'bib' structure |
| brede_bib_medline2bib | brede_bib_medline2bib - Convert MEDLINE string to Bib struct |
| brede_bib_merge | brede_bib_merge - Merge 2 bibliographies |
| brede_bib_pmid2wobib | brede_bib_pmid2wobib - Convert PMID to WOBIB identifier if possible |
| brede_bib_ref2bib | brede_bib_ref2bib - String containing a reference to bib |
| brede_bib_select | brede_bib_select - Select fields or 'bib' structures |
| brede_bm | brede_bm - Functions related to BrainMap |
| brede_bm_correct_exp | brede_bm_correct_exp - Correct the BrainMap database |
| brede_bm_exp2exp | brede_bm_exp2exp - Parse string to get BrainMap Experiment |
| brede_bm_expbib2exp | brede_bm_expbib2exp - Merge exp and bib information |
| brede_bm_get_exp | brede_bm_get_exp - Get BrainMap experiment from the web |
| brede_bm_get_loc | brede_bm_get_loc - Get BrainMap location |
| brede_bm_get_paper | brede_bm_get_paper - Get BrainMap paper |
| brede_bm_paper2abstr | brede_bm_paper2abstr - Get abstract from BrainMap paper |
| brede_bm_paper2bib | brede_bm_paper2bib - Parse string to Get BrainMap paper |
| brede_bm_url | brede_bm_url - Return BrainMap URL for a paper, eksp. or loc. |
| brede_bt_get_entry | brede_bt_get_entry - Get entries from BibTeX file |
| brede_cdf | brede_cdf - Cumulative distribution |
| brede_cdf_bin | brede_cdf_bin - Binomial distribution function |
| brede_cdf_chi2 | brede_cdf_chi2 - CDF for chi2-distriibution |
| brede_cdf_f | brede_cdf_f - Fisher's F distribution |
| brede_cdf_gauss | brede_cdf_gauss - Gaussian (normal) distribution function |
| brede_cdf_gaussianratio | brede_cdf_gaussianratio - Gaussian ratio distribution |
| brede_cdf_hypergeo | brede_cdf_hypergeo - Hypergeometric density distribution |
| brede_cdf_lta2twotailed | brede_pdf_lta2twotailed(pin) - Convert one-tailed to two-tailed |
| brede_cdf_ncf | brede_cdf_ncf - Fisher's singly noncentral F distribution |
| brede_cdf_r | brede_cdf_r - Correlation coefficient for distribution function |
| brede_cdf_rank | brede_cdf_rank - Compute lower tail area for rank |
| brede_cdf_t | brede_cdf_t - Student t distribution |
| brede_cel | brede_cel - Functions for 'cel' structures |
| brede_cel_cel2cel | brede_cel_cel2cel - Convert to canonical form of cell |
| brede_cel_cel2mat | brede_cel_cel2mat - Convert 'cel' to 'mat' structure |
| brede_cel_genotype2mat | brede_cel_genotype2mat - Generate 'mat' structure from genotype |
| brede_cel_match | brede_cel_match - Match columns or rows of two cells |
| brede_cel_subcell | brede_cel_subcell - Take out part of cel structure |
| brede_cel_transpose | brede_cel_transpose - Transpose a 'Cel' structure |
| brede_cocomac_connectivity2mat | brede_cocomac_connectivity2mat - Convert CoCoMac Structure |
| brede_cra_est | brede_cra_est - Canonical ridge estimation |
| brede_exp | brede_exp - Overview over 'exp' functions |
| brede_exp_cat | brede_exp_cat - Concatenate two 'exp' structures |
| brede_exp_exp2exp | brede_exp_exp2exp - Regularize experiemnt structure |
| brede_exp_exp2html | brede_exp_exp2html - Write 'exp' structures to HTML files |
| brede_exp_exp2html_stat | brede_exp_exp2html_stat - Generate HTML with descriptive statistics |
| brede_exp_exp2loc | brede_exp_exp2loc - Convert 'exp' to 'loc' |
| brede_exp_exp2mat | brede_exp_exp2mat - Generate matrix from 'Exp' structure |
| brede_exp_exp2str | brede_exp_exp2str - Convert 'exp' structure to string |
| brede_exp_exp2tex | brede_exp_exp2tex - Convert 'exp' structure to LaTeX |
| brede_exp_exp2vol | brede_exp_exp2vol - Generate volumes from 'Exp' structure |
| brede_exp_extract | brede_exp_extract - Extract experiment |
| brede_exp_getfield | brede_exp_getfield - Get a field from a 'Exp' structure |
| brede_exp_outlier | brede_exp_outlier - Find outliers |
| brede_exp_query | brede_exp_query - Query after 'exp' structures |
| brede_exp_select | brede_exp_select - Select fields or 'exp' structures |
| brede_ext | brede_ext - Overview of ext functions and structure |
| brede_ext_ext2html | brede_ext_ext2html - Generate HTML from ext structures |
| brede_ext_ext2mat | brede_ext_ext2mat - Convert 'ext' to 'mat' structure |
| brede_ext_ext2str | brede_ext_ext2str - Convert 'ext' structure to string |
| brede_ext_getfield | brede_ext_getfield - Get a field from a 'Ext' structure |
| brede_ext_woext2html | brede_ext_woext2html - WOEXT to HTML |
| brede_hash_func | brede_hash_func - Hash function |
| brede_hb_cityscape | brede_hb_cityscape - Construct hyperbrain VRML Cityscape |
| brede_hb_house | brede_hb_house - Hyperbrain VRML House |
| brede_hb_person | brede_hb_person - Hyperbrain VRML person |
| brede_hb_torus | brede_hb_torus - Hyperbrain VRML Torus |
| brede_html_close_jerne | brede_html_close_jerne - Close a HTML file in the jerne style |
| brede_html_list | brede_html_list - Make a HTML with a list |
| brede_html_loc | brede_html_loc - Write locations to a HTML file |
| brede_html_open_jerne | brede_html_open_jerne - Open a file and write a "Jerne" header |
| brede_html_relvol | brede_html_relvol - Construct HTML files with related volumes |
| brede_html_vol2html | brede_html_vol2html - Construct HTML files with probability volumes |
| brede_ica_bs_est | brede_ica_bs_est - Bell & Sejnowski ICA estimation |
| brede_ica_est | brede_ica_est - Independent component analysis |
| brede_ica_nbs_est | brede_ica_nbs_est - Non-symmetric Bell & Sejnowski ICA |
| brede_idf_chi2 | brede_idf_chi2 - IDF for chi2-distriibution |
| brede_idf_gauss | brede_idf_gauss - Inverse cumulated Gaussian distribution |
| brede_jou_wojou2bib | brede_jou_wojou2bib - WOJOU identifier to 'bib' structure |
| brede_loc | brede_loc - Overview of 'Loc' structure functions |
| brede_loc_asymmetry | brede_loc_asymmetry - Generate an asymmetry index |
| brede_loc_coord2url | brede_loc_coord2url - Generate URL from coordinate |
| brede_loc_dist_hausdorff | brede_loc_dist_hausdorff - Hausdorff distance between two point sets |
| brede_loc_dist_minmin | brede_loc_dist_minmin - Minmin distance between two point sets |
| brede_loc_hulllevel | brede_loc_hulllevel - Hull level of 'loc' structures |
| brede_loc_label | brede_loc_label - Label locations |
| brede_loc_loc2coord | brede_loc_loc2coord - Return coordinates from loc structure |
| brede_loc_loc2exp | brede_loc_loc2exp - Convert 'loc' to 'exp' structure |
| brede_loc_loc2html | brede_loc_loc2html - Write locations to HTML file |
| brede_loc_loc2html_stat | brede_loc_loc2html - Write locations to HTML file |
| brede_loc_loc2loc | brede_loc_loc2loc - Convert location structure to location |
| brede_loc_loc2mat | brede_loc_loc2mat - Convert 'loc' to 'mat' structure |
| brede_loc_loc2tex | brede_loc_loc2tex - Loc structure to LaTeX |
| brede_loc_loc2vol | brede_loc_loc2vol - Generate volume from locations |
| brede_loc_loc2wptemplate | brede_loc_loc2wptemplate - Wikipedia template from loc structure |
| brede_loc_mat2loc | brede_loc_mat2loc - Convert matrix to Location structure. |
| brede_loc_mean | brede_loc_mean - Mean coordinate |
| brede_loc_median | brede_loc_median - Median of coordinates in 'loc' structure |
| brede_loc_nearestloc | brede_loc_nearestloc - Find the nearest locations |
| brede_loc_query | brede_loc_query - Query after 'loc' structures |
| brede_loc_select | brede_loc_select - Select fields or 'loc' structures |
| brede_loc_symmetrize | brede_loc_symmetrize - Symmetrize (mirror in the x) locations |
| brede_loc_test_equal | brede_loc_test_equal - Test if 'loc' structures are equal |
| brede_loc_test_gaussian | brede_loc_test_gaussian - Test for gaussianity |
| brede_loc_vol | brede_loc_vol - Generate volume from locations |
| brede_loc_xform | brede_loc_xform - Transform a set of coordinates |
| brede_make | brede_make - Function to compile the mex functions |
| brede_mat | brede_mat - Overview over 'mat' functions |
| brede_mat_2mat2html | brede_mat_2mat2html - Convert two matrices to HTML |
| brede_mat_abs | brede_mat_abs - Row and column abs of matrix |
| brede_mat_add | brede_mat_add - Add two matrices from 'Mat' structures |
| brede_mat_ascendants | brede_mat_ascendants - Find ascendants |
| brede_mat_assignment | brede_mat_assignment - Matching a bipartite graph'(Hungarian method) |
| brede_mat_binarize | brede_mat_binarize - Binarize |
| brede_mat_cat | brede_mat_cat - Concatenate two matrix structures |
| brede_mat_cat_columns | brede_mat_cat_columns - Concatenate columns in matrix structures |
| brede_mat_cat_intercept | brede_mat_cat_intercept - Add a column with 'ones' to a matrix |
| brede_mat_cca | brede_mat_cca - Canonical correlation analysis |
| brede_mat_center | brede_mat_center - Centering of a 'mat' structure |
| brede_mat_clustercoef | brede_mat_clustercoef - Cluster coefficient |
| brede_mat_concordance | brede_mat_concordance - Lin's concordance correlation coefficient |
| brede_mat_conncomp | brede_mat_conncomp - Find connected components |
| brede_mat_corrcoef | brede_mat_corrcoef - Correlation coefficient |
| brede_mat_cov | brede_mat_cov - Covariance matrix |
| brede_mat_cumsum | brede_mat_cumsum - Cumulated sum |
| brede_mat_density | brede_mat_density - Density of a matrix |
| brede_mat_descendants | brede_mat_descendants - Find descendants |
| brede_mat_digamma | brede_mat_digamma - Digamma function |
| brede_mat_dist | brede_mat_dist - Distance between objects |
| brede_mat_divide | brede_mat_divide - Element-wise divide |
| brede_mat_elemproduct | brede_mat_elemproduct - MElement-wise matrix product |
| brede_mat_elimsingle | brede_mat_elimsingle - Eliminate columns with single instances |
| brede_mat_elimstop | brede_mat_elimstop - Eliminate stop words |
| brede_mat_elimzero | brede_mat_elimzero - Eliminate columns with zero instances |
| brede_mat_fowlkesmallows | brede_mat_fowlkesmallows - Compute Fowlkes Mallows similarity |
| brede_mat_getfield | brede_mat_getfield - Get a field from a 'Mat' structure |
| brede_mat_getrows | brede_mat_getrows - Get rows from 'mat' structures |
| brede_mat_glm | brede_mat_glm - General linear model |
| brede_mat_glm_est | brede_mat_glm_est - General linear model estimation |
| brede_mat_glm_testable | brede_mat_glm_testable - Test is a certain contrast is testable |
| brede_mat_hkmc | brede_mat_hkmc - K-means clustering |
| brede_mat_hnmf | brede_mat_hnmf - Hierarchical NMF |
| brede_mat_hubauthority | brede_mat_hubauthority - Hub and authority for a matrix |
| brede_mat_hulllevel | brede_mat_hulllevel - Hull level of vertices |
| brede_mat_ibfa | brede_mat_ibfa - Interbattery analysis |
| brede_mat_ica | brede_mat_ica - Independent component analysis |
| brede_mat_icc | brede_mat_icc - Intraclass correlation coefficient |
| brede_mat_impute | brede_mat_impute - Imputation |
| brede_mat_inv | brede_mat_inv - Inverse of matrix |
| brede_mat_iproduct | brede_mat_iproduct - Inner product of 'mat' structures |
| brede_mat_isnan | brede_mat_isnan - isnan for 'mat' structures |
| brede_mat_kmc | brede_mat_kmc - K-means clustering |
| brede_mat_knn | brede_mat_knn - k nearest neighbor |
| brede_mat_krprod | brede_mat_krprod - Khatri-Rao product |
| brede_mat_kummer | brede_mat_kummer - Kummer's confluent hypergeometric function |
| brede_mat_lad_est | brede_mat_lad_est - Least absolute deviation estimation |
| brede_mat_loganplot | brede_mat_loganplot - Logan plot analysis |
| brede_mat_mat2cel | brede_mat_mat2cel - Convert 'mat' structure to 'cel' structure |
| brede_mat_mat2html | brede_mat_mat2html - Convert 'mat' structure to HTML |
| brede_mat_mat2loc | brede_mat_mat2loc - Convert 'mat' structure to 'loc' structures' |
| brede_mat_mat2mat | brede_mat_mat2mat - Convert or clean matrix |
| brede_mat_mat2str | brede_mat_mat2str - Generate a string for a 'mat' structure |
| brede_mat_mat2tex | brede_mat_mat2html - Convert 'mat' structure to TeX |
| brede_mat_mat2vol | brede_mat_mat2vol - Convert 'mat' to 'vol' structure |
| brede_mat_match | brede_mat_match - Match columns or rows of two matrices |
| brede_mat_mean | brede_mat_mean - Mean of matrix |
| brede_mat_minus | brede_mat_minus - Subtract a matrix from another |
| brede_mat_mma | brede_mat_mma - Multinomial mixture analysis |
| brede_mat_mrtm | brede_mat_mrtm - Ichise's MRTM analysis |
| brede_mat_mutualinfo | brede_mat_mutualinfo - Mutual information |
| brede_mat_negate | brede_mat_negate - Negate element values in matrix |
| brede_mat_nls_est | brede_mat_nls_est - Non-negative least squares estimation |
| brede_mat_nlsb_est | brede_mat_nlsb_est - Non-negative least squares estimation |
| brede_mat_nmf | brede_mat_nmf - Non-negative matrix factorization |
| brede_mat_nmf_normalize | brede_mat_nmf_normalize - Normalize NMF result |
| brede_mat_novelty | brede_mat_novelty - Novelty/outlierness for matrix |
| brede_mat_ones | brede_mat_ones - 'Mat' structure with ones |
| brede_mat_onmf | brede_mat_onmf - Orthogonal non-negative matrix factorization |
| brede_mat_oproduct | brede_mat_oproduct - Inner product of 'mat' structures |
| brede_mat_orthopcaspace | brede_mat_orthopcaspace - Remove PCA-subspace |
| brede_mat_orthospace | brede_mat_orthospace - Projection onto the orthogonal subspace |
| brede_mat_partcorrcoef | brede_mat_partcorrcoef - Correlation coefficient |
| brede_mat_partcorrcoef2csv | brede_mat_partcorrcoef2csv - Partial correlation with results to a CSV file |
| brede_mat_partcorrcoef_test | brede_mat_partcorrcoef_test - Correlation coefficient |
| brede_mat_partcorrcoef_tvalue | brede_mat_partcorrcoef_tvalue - T-value for partial correlation |
| brede_mat_pcr_est | brede_mat_pcr_est - Principal component regression estimation |
| brede_mat_permute | brede_mat_permute - Permute rows of matrix |
| brede_mat_pinv | brede_mat_pinv - Pseudo inverse of matrix |
| brede_mat_plot_bullseye | brede_mat_plot_bullseye - Bullseye plot of 'Mat' structure |
| brede_mat_plot_clusterbush | brede_mat_plot_clusterbush - Plot a hierarchy of clusters |
| brede_mat_plot_count | brede_mat_plot_count - Plot row or columns summeratization |
| brede_mat_plot_lines | brede_mat_plot_lines - Plot matrix elements as lines |
| brede_mat_plot_mds | brede_mat_plot_mds - Multidimensional scaling for 'Mat' structure |
| brede_mat_plot_partcorrcoef_evolve | brede_mat_plot_partcorrcoef_evolve - Plot of evolution of correlation |
| brede_mat_plot_path | brede_mat_plot_path - Plot paths between two nodes. |
| brede_mat_plot_targ | brede_mat_plot_targ - 'Target Sociogram' plot of 'Mat' structure |
| brede_mat_product | brede_mat_product - Multiply two matrices from 'Mat' structures |
| brede_mat_rankindicator | brede_mat_rankindicator - Construct a 'rank indicator' matrix |
| brede_mat_reconerror | brede_mat_reconerror - Reconstruction error for a matrix |
| brede_mat_roc | brede_mat_roc - Receiver operating Characteristics (ROC) |
| brede_mat_rows2strs | brede_mat_rows2strs - Convert rows to strings |
| brede_mat_scale | brede_mat_scale - Scale a matrix |
| brede_mat_sem | brede_mat_sem - Structural equations modeling |
| brede_mat_sem_aic | brede_mat_sem_aic - AIC for structural equation model |
| brede_mat_sem_bic | brede_mat_sem_bic - BIC for structural equation model |
| brede_mat_sem_grow | brede_mat_sem_grow - Grow structural equation model |
| brede_mat_sem_loglikelihood | brede_mat_sem_loglikelihood - Log-likelihood for structural equation |
| brede_mat_skewness | brede_mat_skewness - Skewness |
| brede_mat_sort | brede_mat_sort - Sort rows or columns |
| brede_mat_std | brede_mat_std - Std of matrix |
| brede_mat_submatrix | brede_mat_submatrix - Pick out submatrix |
| brede_mat_sum | brede_mat_sum - Row and column sum of matrix |
| brede_mat_svd | brede_mat_svd - Singular value decomposition |
| brede_mat_transpose | brede_mat_transpose - Transpose a 'Mat' structure |
| brede_mat_wta | brede_mat_wta - Winner takes all |
| brede_nmf_cost_div | brede_nmf_cost_div - NMF divergence costfunction |
| brede_nmf_cost_eucl | brede_nmf_cost_eucl - NMF euclidean cost |
| brede_nmf_est | brede_nmf_est - Non-negative matrix factorization |
| brede_opt_cg | brede_opt_cg - Rasmussen/Goutte's conjugate gradient minimization |
| brede_opt_gradient | brede_opt_gradient - Optimization with Gradient minimization |
| brede_pde | brede_pde - Probability density estimation |
| brede_pde_binmix | brede_pde_binmix - Estimation of binomial mixture model |
| brede_pde_binmix_der | brede_pde_binmix_der - Derivative of the binomial mixture |
| brede_pde_binmix_ll | brede_pde_binmix_ll - Loglikelihood of mixture of binomials |
| brede_pde_specht | brede_pde_specht - Specht Kernel evaluation |
| brede_pde_spechtest | brede_pde_spechtest - Estimation of the kernel width for Specht |
| brede_pde_spechtlp | brede_pde_spechtlp - Specht Kernel logarithmic probability |
| brede_pdf_bin | brede_pdf_bin - Binomial probability density function |
| brede_pdf_binmix | brede_pdf_binmix - Probability density for binomial mixture |
| brede_pdf_cauchy | brede_pdf_cauchy - PDF of multivariate Cauchy-distribution |
| brede_pdf_chi2 | brede_pdf_chi2 - PDF of chi2-distriibution |
| brede_pdf_gauss | brede_pdf_gauss - Gaussian probability density |
| brede_pdf_gaussianratio | brede_pdf_gaussianratio - Gaussian ratio distribution |
| brede_pdf_hypergeo | brede_pdf_hypergeo - Hypergeometric density distribution |
| brede_pdf_nig | brede_pdf_nig - Normal inverse gamma probability density |
| brede_pdf_t | brede_pdf_t - PDF of multivariate t-distribution |
| brede_per | brede_per - Overview of function for 'per' structure |
| brede_per_per2html | brede_per_per2html - Convert 'per' structure to HTML |
| brede_plot | brede_plot - Plot functions of brede |
| brede_plot_set_fontsize | brede_plot_set_fontsize - Set fontsize for plot |
| brede_plot_wordfreq | brede_plot_wordfreq - Plot word frequency |
| brede_plot_wordsvd | brede_plot_wordsvd - Plot singular vector from SVD of word matrix |
| brede_re_match | brede_re_match - Regular expresssion matching |
| brede_read | brede_read - Overview of file reading functions |
| brede_read_air | brede_read_air - Read Roger Woods AIR file |
| brede_read_amat | brede_read_amat - Read in Antonia Hamiliton's AMAT database |
| brede_read_analyze | brede_read_analyze - Reads an ANALYZE file |
| brede_read_analyze4d | brede_read_analyze4d - Reads 4 dimensional ANALYZE file |
| brede_read_bibtex | brede_read_bibtex - Read BIBTeX file |
| brede_read_bm_ent | brede_read_bm_ent - Read BrainMap ent file |
| brede_read_csv2cel | brede_read_csv2cel - Read file for cel structure |
| brede_read_csv2loc | brede_read_csv2loc - Read locations from a comma separated |
| brede_read_csv2mat | brede_read_csv2mat - Read comma separated file to 'mat' structure |
| brede_read_guessfiletype | brede_read_guessfiletype - Try to guess the filetype |
| brede_read_nifti1 | brede_read_nifti1 - Reads an NIfTI-1 file |
| brede_read_obj | brede_read_obj - Read MNI obj file with surface |
| brede_read_off | brede_read_off - Read an OFF file |
| brede_read_rawicbm | brede_read_rawicbm - Reads a file containing a volume. |
| brede_read_spm_designmatrix | brede_read_spm_mat - Read SPM design matrix |
| brede_read_spm_eegtemplate | brede_read_spm_eegtemplate - Read SPM5 EEGtemplates |
| brede_read_spm_gray | brede_read_spm_gray - Read SPM's apriori gray volume from SPM |
| brede_read_spm_mat | brede_read_spm_mat - Read SPM .mat transformation matrix |
| brede_read_spm_sn_affine | brede_read_spm_sn_affine - Read SPM transformation matrix from 'sn' |
| brede_read_txtlines | brede_read_txtlines - Read file with text lines |
| brede_read_txtmatrix | brede_read_txtmatrix - Read a 'Mat' structure from text files. |
| brede_read_txttable | brede_read_txttable - Read file with text table |
| brede_read_vapet3d | brede_read_vapet3d - Read a VAPET volume file |
| brede_read_volumes | brede_read_volumes - Read volume files |
| brede_read_xls2cel | brede_read_xls2cel - Read Excel XLS file to a 'cel' structure |
| brede_read_xml | brede_read_xml - Read XML file into structure |
| brede_read_xml2vol | brede_read_xml2vol - Read a XML file with a volume |
| brede_read_xml_cocomac | brede_read_xml_cocomac - Read CoCoMac XML file |
| brede_roi | brede_roi - Over of ROI functions |
| brede_roi_roi2html | brede_roi_roi2html - Convert 'roi' structure to HTML |
| brede_roi_roi2html_alpha | brede_roi_roi2html_alpha - Alphabetic index for 'roi' field |
| brede_roi_roi2html_ham | brede_roi_roi2html_ham - Index for Hammers field |
| brede_roi_roi2html_svarer | brede_roi_roi2html_svarer - Index for Svarer field in 'roi' |
| brede_roi_roi2html_tzour | brede_roi_roi2html_tzour - Index for Tzourio-Mazoyer field in 'roi' |
| brede_roi_roi2mat | brede_roi_roi2mat - Convert 'roi' structures to 'mat' structure |
| brede_roi_roi2names | brede_roi_roi2names - Get names for ROI |
| brede_roi_roi2str | brede_roi_roi2str - Convert 'roi' structure to string |
| brede_roi_roi2tex | brede_roi_roi2tex - Construct LaTeX from 'roi' structure |
| brede_roi_tzour2roi | brede_roi_tzour2roi - Find/convert Tzourio-Mazoyer AAL identifier |
| brede_roi_woroi2loc | brede_roi_woroi2loc - Get location for brain region |
| brede_roi_woroi2roi | brede_roi_woroi2roi - Get 'Roi' for a WOROI identifier |
| brede_spm2_table2loc | brede_spm2_table2loc - Convert result table to locations |
| brede_spm99_table2loc | brede_spm99_table2loc - Convert result table to locations |
| brede_stereo_anagl | brede_stereo_anagl - Make anaglyph stereoscopy image |
| brede_str | brede_str - Overview of string functions |
| brede_str_author2author | brede_str_author2author - Parse string with authors |
| brede_str_charfrq | brede_str_charfrq - Character frequency |
| brede_str_clean | brede_str_clean - 'Clean' string |
| brede_str_date | brede_str_date - Return date with ISO formatting |
| brede_str_deblank | brede_str_deblank - Removes starting and trailing whitespace |
| brede_str_dehtml | brede_str_dehtml - Remove HTML markup from string. |
| brede_str_elimstop | brede_str_elimstop - Eliminate stop words |
| brede_str_erase | brede_str_erase - Erase a substring in a string |
| brede_str_google2urls | brede_str_google2urls - Extract URLs from the Google search result |
| brede_str_html2str | brede_str_xml2str - Deescape xml |
| brede_str_lix | brede_str_lix - String: lix |
| brede_str_ngram | brede_str_ngram - N-gram |
| brede_str_pdf2txt | brede_str_pdf2txt - Convert PDF file to text |
| brede_str_phrasefrq | brede_str_phrasefrq - Compute phrase frequency |
| brede_str_plot_chfr | brede_str_plot_chfr - Plot character frequency |
| brede_str_plot_phrasefrq | brede_str_plot_phrasefrq - Plot phrase frequency |
| brede_str_ps2txt | brede_str_ps2txt - Convert a PostScript file to a text file. |
| brede_str_split | brede_str_split - Split a string into substring |
| brede_str_splitkey | brede_str_splitkey - Split keyword string into words matrix |
| brede_str_splitword | brede_str_splitword - Split string into words |
| brede_str_str2alphanum | brede_str_str2alphanum - Maintain only alphanumeric characters |
| brede_str_str2bib | brede_str_str2bib - Convert string to bib |
| brede_str_str2html | brede_str_str2html - Convert string to HTML |
| brede_str_str2mat | brede_str_str2mat - Convert string into a 'Mat' structure |
| brede_str_str2mat_wordbigram | brede_str_str2mat_wordbigram |
| brede_str_str2woroi | brede_str_str2woroi - Try to convert a string to a WOROI |
| brede_str_ucfirst | brede_str_ucfirst - Upper case first letter |
| brede_str_wordstem | brede_str_wordstem - Stem the words of a string |
| brede_str_wptemplate2cel | brede_str_wptemplate2cel - Convert Wikipedia templates to cel |
| brede_str_wptemplate2struct | brede_str_wptemplate2struct - Wikipedia template to structure |
| brede_struct | brede_struct - Function for structures |
| brede_struct_array2cell | brede_struct_array2cell - Convert structure as array to cell array |
| brede_struct_field2cellstr | brede_struct_field2cellstr - Convert field to cellstr |
| brede_struct_field2num | brede_struct_field2num - Convert field to number |
| brede_struct_field2nums | brede_struct_field2nums - Convert field to number |
| brede_struct_field2str | brede_struct_field2str - Convert field to cellstr |
| brede_struct_fieldnames | brede_struct_fieldnames - Return fieldnames |
| brede_struct_getelement | brede_struct_getelement - Get element from a field. |
| brede_struct_guesstype | brede_struct_guesstype - Try to guess type of structure |
| brede_struct_select | brede_struct_select - Select fields from structures |
| brede_struct_struct2str | brede_struct_struct2str - Convert structure to string |
| brede_sur | brede_sur - Overview of 'sur' structure and functions |
| brede_sur_area | brede_sur_area - Measure the area of a surface |
| brede_sur_color | brede_sur_color - Generate color for surface |
| brede_sur_connectivity | brede_sur_connectivity - Connectivity matrix |
| brede_sur_convhull | brede_sur_convhull - Convex hull for a surface |
| brede_sur_cube | brede_sur_cube - Construct a cube in a 'sur' structure |
| brede_sur_curvature | brede_sur_curvature - Curvature of a surface |
| brede_sur_dist | brede_sur_dist - Distance to surface |
| brede_sur_drury | brede_sur_drury - Return Drury cortex surface |
| brede_sur_flatten | brede_sur_flatten - Flatten surface |
| brede_sur_hulllevel | brede_sur_hulllevel - Hull level of vertices |
| brede_sur_octahedron | brede_sur_octahedron - Construct a octahedron in a 'sur' structure |
| brede_sur_reduce | brede_sur_reduce - Reduce surface |
| brede_sur_refine | brede_sur_refine - Refine surface |
| brede_sur_scalevert | brede_sur_scale - Scale vertices in 'sur' structure |
| brede_sur_smoothvert | brede_sur_smoothvert - Smooth position of vertices |
| brede_sur_sphere | brede_sur_sphere - Construct a sphere in a 'sur' structure |
| brede_sur_subsurface | brede_sur_subsurface - Extract sub-surface |
| brede_sur_sur2mat | brede_sur_sur2mat - Convert 'sur' structure to 'mat' |
| brede_sur_tetrahedron | brede_sur_tetrahedron - Construct a tetrahedron in a 'sur' structure |
| brede_sur_triangularize | brede_sur_triangularize - Triangularize mesh |
| brede_sur_unfold | brede_sur_unfold - Unfold a surfaces |
| brede_svd_est | brede_svd_est - Singular value decomposition |
| brede_svd_test | brede_svd_test - Test for principal components. |
| brede_ta2 | brede_ta2 - Overview of 2D plotting function |
| brede_ta2_axis | brede_ta2_axis - Control axis scaling |
| brede_ta2_concortex | brede_ta2_concortex - Construct 3D Talairach contours of cortex |
| brede_ta2_digitize | brede_ta2_digitize - Interactive digitization in Talairach |
| brede_ta2_frame | brede_ta2_frame - Frame for 2D Talairach plot |
| brede_ta2_grid | brede_ta2_grid - Construct 2D Talairach grid |
| brede_ta2_loc | brede_ta2_loc - Plot 'loc' in 2D Talairach space |
| brede_ta2_vol | brede_ta2_vol - Plot volume in 2D slices |
| brede_ta3 | brede_ta3 - Overview of 'ta3' functions |
| brede_ta3_aal | brede_ta3_aal - Display the AAL segmented images |
| brede_ta3_axes | brede_ta3_axes - Construct 3D Talairach axes |
| brede_ta3_axlabel | brede_ta3_axlabel - Construct 3D Talairach axes labels |
| brede_ta3_bib | brede_ta3_bib - Plot a bib in 3D Talairach space |
| brede_ta3_brodnum | brede_ta3_brodnum - Construct 3D Talairach Brodmann numbers |
| brede_ta3_concortex | brede_ta3_concortex - Construct 3D Talairach contours of cortex |
| brede_ta3_contour | brede_ta3_contour - Construct 3D Talairach contours |
| brede_ta3_drury | brede_ta3_drury - Construct 3D Talairach Drury cortex surface |
| brede_ta3_exp | brede_ta3_exp - Plot an exp in 3D Talairach space |
| brede_ta3_eyes | brede_ta3_eyes - Construct 3D Talairach eyes |
| brede_ta3_frame | brede_ta3_frame - Construct 3D Talairach Frame |
| brede_ta3_grid | brede_ta3_grid - Construct 3D Talairach grid |
| brede_ta3_light | brede_ta3_light - Setup light for Talairach display |
| brede_ta3_loc | brede_ta3_loc - Construct 3D Talairach locations (points) |
| brede_ta3_mat | brede_ta3_mat - Plot matrix in 3D corner cube environment |
| brede_ta3_movie | brede_ta3_movie - Make a movie |
| brede_ta3_patch | brede_ta3_patch - Construct 3D patch surface |
| brede_ta3_patchwall | brede_ta3_patchwall - Construct 3D patch wall |
| brede_ta3_sur | brede_ta3_sur - Plot a 'sur' surface in Talairach space |
| brede_ta3_sur_digitize | brede_ta3_sur_digitize - Digitization of surfaces |
| brede_ta3_tick | brede_ta3_tick - Tick marks for Talairach |
| brede_ta3_view | brede_ta3_view - Set viewpoint |
| brede_ta3_volslice | brede_ta3_volslice - Construct 3D Talairach volume slices |
| brede_ta3_volsurf | brede_ta3_volsurf - Construct 3D Talairach volume surface |
| brede_tal_concere | brede_tal_concere - Return the contour of the cerebellum |
| brede_ten | brede_ten - Overview of tensor functions |
| brede_ten_matricize | brede_ten_matricize - Matricize tensor into a matrix |
| brede_ten_parafac | brede_ten_parafac - PARAFAC decomposition of tensor |
| brede_ten_ten2ten | brede_ten_ten2ten - Normalize tensor structure |
| brede_tex_list | brede_tex_list - Make a LaTeX code with list |
| brede_ui | brede_ui - Main graphical user interface |
| brede_ui_bib | brede_ui_bib - UI for editing 'Bib' structure |
| brede_ui_bibs | brede_ui_bibs - UI for editing 'Bibs' structure |
| brede_ui_cel | brede_ui_cel - UI for viewing a 'cel' structure |
| brede_ui_exp | brede_ui_exp - UI for editing 'Exp' structure |
| brede_ui_getfiles | brede_ui_getfiles - UI for specifying filenames |
| brede_ui_loc | brede_ui_loc - UI for editing 'Loc' structure |
| brede_ui_loc_init | brede_ui_loc_init - UI for initialization of editing 'Loc' structure |
| brede_ui_mat | brede_ui_mat - UI for viewing a 'Mat' structure |
| brede_ui_mat_partcorrcoef | brede_ui_mat_partcorrcoef - UI for partial correlation |
| brede_ui_roi | brede_ui_roi - UI for editing 'Roi' structure |
| brede_ui_rois | brede_ui_rois - UI for editing 'Rois' structure |
| brede_ui_sur | brede_ui_sur - UI for viewing a 'Sur' structure |
| brede_ui_talspace_digitize | brede_ui_talspace_digitize - Digitize images from TalSpace |
| brede_ui_vol | brede_ui_vol - UI for viewing a 'Vol' structure |
| brede_ui_vols | brede_ui_vols - UI for viewing a 'Vol' structure |
| brede_url | brede_url - Overview of URL functions |
| brede_url_braininfo | brede_url_braininfo - Return URL to BrainInfo |
| brede_url_cocomacsite | brede_url_cocomacsite - Construct CocoMac Site URL |
| brede_url_doi | brede_url_doi - Construct URL from DOI |
| brede_url_fmridcid | brede_url_fmridcid - Construct a URL from a fMRI data center ID |
| brede_url_genesymbol | brede_url_genesymbol - URL for gene symbol |
| brede_url_ibvdname | brede_url_ibvdname - Construct URL for IBVD name |
| brede_url_meshuid | brede_url_meshuid - Generate URL to MeSH unique identifier |
| brede_url_neurondbpr | brede_url_neurondbpr - Construct URL for SenseLab NeuronDB |
| brede_url_neurotreeid | brede_url_neurotreeid - Construct URL for NeuroTree Id |
| brede_url_omim | brede_url_omim - Construct URL from OMIM |
| brede_url_pmid | brede_url_pmid - Construct URL for Pubmed request |
| brede_url_whoicdten | brede_url_whoicdten - Generate URL to WHO ICD-10 identifier |
| brede_url_wikipedia | brede_url_wikipedia - Generate URL to MeSH unique identifier |
| brede_url_wobib | brede_url_wobib - Construct URL from WOBIB |
| brede_url_woexp | brede_url_woexp - Construct URL from WOEXP |
| brede_url_woext | brede_url_woext - Construct URL from WOEXT |
| brede_url_woper | brede_url_woper - Construct URL from WOPER |
| brede_url_woroi | brede_url_woroi - Construct URL from WOROI |
| brede_ut_ismember | brede_ut_ismember - More effecient implementation of ismember |
| brede_vhb_bkground | brede_vhb_bkground - Construct VRML Hyperbrain Background |
| brede_vhb_close | brede_vhb_close - Close a VRML Hyperbrain file |
| brede_vhb_house | brede_vhb_house - Hyperbrain VRML House |
| brede_vhb_money | brede_vhb_money - Hyperbrain VRML Money |
| brede_vhb_navigate | brede_vhb_navigate - Construct VRML Hyperbrain NavigationInfo |
| brede_vhb_open | brede_vhb_open - Open a VRML Hyperbrain file |
| brede_vhb_person | brede_vhb_person - Hyperbrain VRML person |
| brede_vhb_petscanner | brede_vhb_petscanner - Renders a PET scanner in VRML |
| brede_vhb_software | brede_vhb_software - Display a 3D icon for software |
| brede_vhb_subjects | brede_vhb_subjects - Renders subjects in VRML |
| brede_vhb_torus | brede_vhb_torus - VRML Hyperbrain Torus |
| brede_vhb_viewpoint | brede_vta_viewpoint - Construct VRML Hyperbrain viewpoints |
| brede_vol | brede_vol - Overview of volume functions |
| brede_vol_abs | brede_vol_abs - Absolute value of voxel values |
| brede_vol_add | brede_vol_add - Add two volumes |
| brede_vol_and | brede_vol_and - Binary AND function on volumes |
| brede_vol_assign2label | brede_vol_assign2label - Convert assignment to labeled 'vol' |
| brede_vol_binarize | brede_vol_binarize - Binarize 'vol' structure |
| brede_vol_center | brede_vol_center - Calculate center of volume |
| brede_vol_coactivate | brede_vol_coactivate - Find coactivation volume |
| brede_vol_density2prob | brede_vol_density2prob - Convert density to probability volume |
| brede_vol_divide | brede_vol_divide - Divide 'vol' structures |
| brede_vol_flood | brede_vol_flood - Flooding operation on binary volume |
| brede_vol_gencoord | brede_vol_gencoord - Generate coordinates for volumes |
| brede_vol_get_voxelvalue | brede_vol_get_voxelvalue - Get the voxel value from a 'vol' |
| brede_vol_glcm | brede_vol_glcm - Grey level cooccurence matrix |
| brede_vol_loc | brede_vol_loc - Find location (foci) in a volume |
| brede_vol_mask | brede_vol_mask - Generate volume mask |
| brede_vol_mat2vol | brede_vol_mat2vol - Convert vector/matrix to volume structure |
| brede_vol_mean | brede_vol_mean - Mean over volumes |
| brede_vol_mirror | brede_vol_mirror - Mirror volume |
| brede_vol_negate | brede_vol_negate - Negate 'vol' structure |
| brede_vol_not | brede_vol_not - Binary not function on volume |
| brede_vol_or | brede_vol_or - Binary OR function on volumes |
| brede_vol_origin | brede_vol_origin - Return origin of volume in 'vol' structure |
| brede_vol_plot_cumdist | brede_vol_plot_cumdist - Plot cumulative distribution function |
| brede_vol_plot_hist | brede_vol_plot_hist - Plot histogram for 'vol' structure |
| brede_vol_plot_roc | brede_vol_plot_roc - Plot ROC curve |
| brede_vol_product | brede_vol_product - Product between volumes |
| brede_vol_range | brede_vol_range - Find range of volume |
| brede_vol_regident | brede_vol_regident - Region identification in a volume |
| brede_vol_register | brede_vol_register - Image registration of volume(s) |
| brede_vol_resample | brede_vol_resample - Resample the volume |
| brede_vol_scale | brede_vol_scale - Scaling of a volume |
| brede_vol_smooth | brede_vol_smooth - Smooth a volume |
| brede_vol_subtract | brede_vol_subtract - Subtract one volume from an other |
| brede_vol_threshold | brede_vol_threshold - Threshold volume |
| brede_vol_twosample | brede_vol_twosample - Two-sample t-statistics |
| brede_vol_vol2exp | brede_vol_vol2exp - A 'mat' structure from a 'exp' structure |
| brede_vol_vol2loc | brede_vol_vol2loc - Find location (foci) in a volume |
| brede_vol_vol2mat | brede_vol_vol2mat - A 'mat' structure from a 'vol' structure |
| brede_vol_vol2str | brede_vol_vol2str - String for 'vol' structure |
| brede_vol_vol2sur | brede_vol_vol2sur - Convert volume to surface |
| brede_vol_vol2vol | brede_vol_vol2vol - Clean a 'vol' structure |
| brede_vol_vol2vrml | brede_vol_vol2vrml - Construct VRML surface from a volume |
| brede_vol_vols2html | brede_vol_vols2html - Convert volumes to HTML |
| brede_vol_volumemean | brede_vol_volumemean - Mean in volume |
| brede_vol_xform | brede_vol_xform - Transform a 'vol' structure |
| brede_vol_zero | brede_vol_zero - Mask zero volume (partially) |
| brede_vrml | brede_vrml - Overview of VRML functions |
| brede_vrml_faceset | brede_vrml_faceset - Construct VRML faceset or lineset |
| brede_vrml_open | brede_vrml_open - Open a VRML file |
| brede_vrml_strimage | brede_vrml_strimage - Convert string to VRML texture |
| brede_vrml_text | brede_vrml_text - Write a text in VRML |
| brede_vrml_unique | brede_vrml_unique - Return a unique identifier |
| brede_vrml_volplane | brede_vrml_volplane - Construct VRML surface from a volume |
| brede_vrml_volsurf | brede_vrml_volsurf - Construct VRML surface from a volume |
| brede_vta | brede_vta - Generation of Talairach VRML files |
| brede_vta_1020elec | brede_vta_1020elec - Construct VRML Talairach 10 20 electrodes |
| brede_vta_1020slice | brede_vta_1020slice - Construct VRML Talairach 10 20 slices |
| brede_vta_aniview | brede_vta_aniview - Construct VRML Talairach animated viewpoint |
| brede_vta_axes | brede_vta_axes - Construct VRML Talairach axes |
| brede_vta_axlabel | brede_vta_axlabel - Construct VRML Talairach axes labels |
| brede_vta_bib | brede_vta_bib - Construct VRML Talairach model from Bib |
| brede_vta_bkground | brede_vta_bkground - Construct VRML Talairach Background |
| brede_vta_brodnum | brede_vta_brodnum - Construct VRML Talairach Brodmann numbers |
| brede_vta_close | brede_vta_close - Close a VRML Talairach file |
| brede_vta_contour | brede_vta_contour - Construct VRML Talairach contour |
| brede_vta_dipole | brede_vta_dipole - Construct VRML Talairach dipole |
| brede_vta_drury | brede_vta_drury - Construct VRML Talairach Drury cortex surface |
| brede_vta_exp | brede_vta_exp - Contruct VRML Talairach model from 'exp' |
| brede_vta_grid | brede_vta_grid - Construct VRML Talairach grid |
| brede_vta_loc | brede_vta_loc - Plot VRML Talairach points |
| brede_vta_navigate | brede_vta_navigate - Construct VRML Talairach NavigationInfo |
| brede_vta_open | brede_vta_open - Open a VRML Talairach file |
| brede_vta_orientlab | brede_vta_orientlab - Construct VRML Talairach Orientation labels |
| brede_vta_panmark | brede_vta_panmark - Construct VRML Talairach PAN markers |
| brede_vta_patch | brede_vta_patch - Construct 3D patch surface |
| brede_vta_patchwall | brede_vta_patchwall - Construct 3D patch wall in a VRML file |
| brede_vta_point | brede_vta_point - Plot VRML Talairach points |
| brede_vta_ruler | brede_vta_ruler - Construct VRML Talairach ruler |
| brede_vta_sphere | brede_vta_sphere - Construct VRML Talairach sphere |
| brede_vta_viewpoint | brede_vta_viewpoint - Construct VRML Talairach viewpoints |
| brede_vta_volsurf | brede_vta_volsurf - Construct VRML surface from a volume |
| brede_web | brede_web Web structure and functions |
| brede_web_alltheweb | brede_web_alltheweb - Perform an alltheweb search |
| brede_web_altavista | brede_web_altavista - Perform an AltaVista search |
| brede_web_google | brede_web_google - Perform an Google search |
| brede_web_pmid | brede_web_pmid - Get abstract from PubMed identifier |
| brede_web_pubmed | brede_web_pubmed - Search Pubmed |
| brede_web_spmmail | brede_web_spmmail - Download SPM email |
| brede_web_url | brede_web_url - Download a webpage |
| brede_web_web2html | brede_web_web2html - Convert 'web' structure to HTML |
| brede_web_web2mat | brede_web_web2mat - Convert 'web' structure to 'mat' |
| brede_web_web2urls | brede_web_web2urls - Extract outgoing links as URLs. |
| brede_web_web2web | brede_web_web2web - Convert 'web' structure |
| brede_web_wikipedia | brede_web_wikipedia - Download a Wikipedia page |
| brede_write | brede_write - File writing functions |
| brede_write_air | brede_write_air - Write Roger Woods AIR file |
| brede_write_analyze | brede_write_analyze - Writes an ANALYZE file |
| brede_write_csv | brede_write_csv - Write comma-separated values file |
| brede_write_dot | brede_write_dot - Write GraphViz dot file |
| brede_write_json | brede_write_json - Write JSON file |
| brede_write_loc | brede_write_loc - Write a 'loc' structure to a file |
| brede_write_loc2csv | brede_write_loc2csv - Write 'loc' to comma separated values file |
| brede_write_mat2csv | brede_write_mat2csv - Write comma-separated values file |
| brede_write_mricro_roi | brede_write_mricro_roi - Write a MRIcro 'roi' file |
| brede_write_nuages | brede_write_nuages - Write Nuages cnt file |
| brede_write_off | brede_write_off - Write a GeomView OFF (OOGL) file |
| brede_write_png | brede_write_png - Write a PNG file |
| brede_write_pov | brede_write_pov - Write POV file |
| brede_write_strings | brede_write_strings - Write strings to text file |
| brede_write_vol2xml | brede_write_vol2xml - Write 'vol' structure as XML |
| brede_write_xml | brede_write_xml - Write structure to XML |
| bredx_re_match | bredx_re_match - Regular expresion matching with mex file. |
| bredx_vol_flood | bredx_vol_flood - MEX header for flooding operation |