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brede_ui_vol

PURPOSE ^

brede_ui_vol - UI for viewing a 'Vol' structure

SYNOPSIS ^

function varargout = brede_ui_vol(varargin)

DESCRIPTION ^

 brede_ui_vol         - UI for viewing a 'Vol' structure

       function brede_ui_vol
       function brede_ui_vol(V)

       Input:  V    'Vol' structures in a cell array.

       View a 'vol' structure. A 'vol' structure contains a volume in
       the 'volume' field as well as some information about its
       stereotaxic coordinates. 
  
       The 'vol' structure can be read in from an ANALYZE file. 

       Menu|File|Cerebellum 1 - Open brede/data/cerebellum1.xml - an
                     XML file with definition of a of a binary volume
                     representing (approximately?) the cerebellum in
                     MNI-space. 

       Menu|File|Brain Mask 1 - Open brede/data/brainmask1.xml - an
                     XML file with a definition of a binary volume
                     representing a brain mask (GM+WM+CSF) in
                     MNI-space. 

       The 'View' will display the volume in the window or display
       information about the volume in the command line, e.g., 'Pop Vol
       structure' will pop the 'vol' structure to the command line.

       For the 'Image' display use the - and + keys to scroll through
       the volume. 

       The 'Spawn' menu will open a new window with the volume converted
       to another type of structure, e.g., to a row matrix ('mat') with
       a call to the brede_vol_vol2mat function. The converted matrix
       will be displayed with the brede_ui_mat function. 

       'Negated voxel values' will change the sign of the voxel values
       with the brede_vol_negate function. 

       'Register to center of gravity' will spatially move the volume so
       its center of gravity appear approximately at (0,0,0) stereotaxic
       coordinate. This is performed with the brede_vol_register
       function. 

       Example: 
         brede_ui_vol

       See also BREDE, BREDE_VOL, BREDE_UI, BREDE_TA2, BREDE_TA3,
                BREDE_UI_BIB, BREDE_UI_EXP, BREDE_UI_LOC,
                BREDE_UI_MAT, BREDE_UI_VOLS, BREDE_READ_ANALYZE,
                BREDE_READ_XML2VOL, BREDE_VOL_NEGATE,
                BREDE_VOL_REGISTER, BREDE_VOL_VOL2LOC,
                BREDE_VOL_VOL2MAT.

 $Id: brede_ui_vol.m,v 1.13 2009/10/15 15:25:26 fn Exp $

CROSS-REFERENCE INFORMATION ^

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