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brede_ta2_vol

PURPOSE ^

brede_ta2_vol - Plot volume in 2D slices

SYNOPSIS ^

function brede_ta2_vol(V, varargin)

DESCRIPTION ^

 brede_ta2_vol        - Plot volume in 2D slices

       Input:    V      'Vol' structure or string with ANALYZE filename 

       Property: Alpha     [ {1} | value between 0 and 1 ] Opaqueness 
                 BackgroundColor [ 3 element vector ] Background
                           color. The default is the first color from
                           the 'colormap' that can be controlled from
                           the 'ColorMap' property. Values should be
                           between 0 and 1.
                 Colormap  [ {hot} | gray | invgray | hsv | jet |
                           correlation | ... ] Colormap 
                 OrthoType [ {transversal} | coronal | sagittal ]
                 Range     [ {[min(V) max(V)]} ] Range for the colormap
                 Slices    [ {[-8:11 ]*0.008} ] Specification of the
                           stereotaxic coordinate of the slice
                           positions in meters
                 Space     [ {Talairach} | jerom ] Control for the
                           spatial range of the visualization. 
                 Threshold [ {NaN} | real ] 

       Plot a volume with 2D slices. 

       The input can be a 'vol' structure or a ANALYZE volume
       filename. 

       For the 'Space' property the 'Talairach' is suitable
       visualization of the human brain, while 'Jerom' is a
       definition of range for a specific macaque monkey.

       'ColorMap' and 'Range' determines the color of the
       pixels. 'ColorMap'='Correlation' will produce a special colormap
       suited to correlation and the range will be adjusted from -1 to
       1, unless set with the 'range' property.
  
       Example:
         brede_ta2_vol('spmT_0002', 'threshold', 3, 'colormap', 'jet')

         % An other example with a macaque file
         V1 = brede_read_analyze('sn_jerom25_run17_000')
         figure
         brede_ta2_vol(V1, 'slices', -0.004:0.002:0.040, 'space', 'jerom')

       See also BREDE, BREDE_TA2, BREDE_TA3, BREDE_VOL,
                BREDE_TA2_FRAME.

 $Id: brede_ta2_vol.m,v 1.12 2009/07/16 16:24:48 fn Exp $

CROSS-REFERENCE INFORMATION ^

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