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brede_exp

PURPOSE ^

brede_exp - Overview over 'exp' functions

SYNOPSIS ^

This is a script file.

DESCRIPTION ^

 brede_exp            - Overview over 'exp' functions

       Functions:
         brede_exp_cat       - Concatenate two 'exp' structures
         brede_exp_exp2exp   - Regularize 'exp' structure
         brede_exp_exp2html  - Convert 'exp' to HTML web-pages
         brede_exp_exp2html_stat - HTML page with exp statistics
         brede_exp_exp2loc   - Convert 'exp' to 'loc' structures
         brede_exp_exp2mat   - Convert 'exp' to matrix structure
         brede_exp_exp2str   - Convert 'exp' to string
         brede_exp_exp2tex   - Convert 'exp' to LaTeX format
         brede_exp_exp2vol   - Convert 'exp' to 'vol' structure
         brede_exp_getfield  - Get a field from 'exp' structures
         brede_exp_query     - Query for experiments
         brede_exp_select    - Select query for experiments

         brede_bib_bib2exp   - Convert 'bib' to 'exp' structures
         brede_bm_exp2exp    - Convert BrainMap 'experiment'
                               web-pages to a 'exp' structure
         brede_loc_loc2exp   - Convert 'loc' to 'exp' structures
         brede_vta_exp       - Construct a VRML file from an 'exp'

       The 'exp' structure contains an experiment. This should
       contain a summary image represented as a 'vol' structure or an
       array of 'loc' structures together with a description, eg,
       bibliographic (with the 'bib' structure) or more precise
       definition of the behavioral domain, modality, task, etc.

       The 'exp' structure can be constructed by entering the values
       in the window controlled from the brede_ui_exp function. It
       can also be constructed from BrainMap experiment
       web-pages. For the fields generated from BrainMap experiments
       see brede_bm_exp2exp.  

       The 'exp' structure is usually part of a 'bib' structure. This
       'bib' structure contains one or more 'exp' structure. 

       'Exp' structure:
          E.type = 'exp'        Structure identifier
          E.Bib                 A 'Bib' structure with bibliographic 
                                information
          E.Loc                 Array of 'Loc' structures
          E.Vol                 'Vol' structure
          E.ageMean             Mean age of subjects/patients 
          E.ageMin              Age of youngest subject/patient
          E.ageMax              Age of oldest subject/patient
          E.analysisSoftware    Name of software used for image analysis
          E.behavioralDomain    Short description of connective domain
          E.brainMapExpId       BrainMap Experiment Id        
          E.brainMapPaperId     BrainMap Paper Id
          E.capsuleDescription  Short description
          E.comment             Comment for database item
          E.freeFormDescription Longer description
          E.labOfExperiment     Lab with the acquisition took place
          E.measuredVariable    Experimental measured variable (CBF, ...)
          E.modality            Acquisition modality (PET, fMRI, ...)
          E.numberOfSubjects    Number of subjects in study
          E.numberOfSubjectsFemale Number of female subjects
          E.numberOfSubjectsMale Number of male subjects
          E.scanner             Brain scanner for the functional data
          E.segmentationTemplate Name of brain parcellation scheme
          E.spatialFilterFwhm   Full width half max spatial filter
          E.specificTask        Specific experimental task
          E.tracer              Radioactive tracer.
          E.woexp               WOEXP identifier (Brede database)
          E.woext               WOEXT identifiers for external component
          E.woextNegative       WOEXT identifiers for decreases
 
       All the fields are obtional. However, it is recommended that
       the structure contains E.type = 'exp'.

       See also BREDE, BREDE_UI_EXP, BREDE_BIB, BREDE_BM, BREDE_EXT,
                BREDE_LOC, BREDE_MAT, BREDE_STR, BREDE_VOL,
                BREDE_EXP_CAT, BREDE_EXP_EXP2EXP, BREDE_EXP_EXP2HTML,
                BREDE_EXP_EXP2LOC, BREDE_EXP_EXP2MAT,
                BREDE_EXP_EXP2TEX, BREDE_EXP_EXP2VOL,
                BREDE_EXP_GETFIELD, BREDE_EXP_QUERY,
                BREDE_EXP_SELECT, BREDE_BIB_BIB2EXP,
                BREDE_BM_EXP2EXP, BREDE_HTML_RELVOL,
                BREDE_LOC_LOC2EXP, BREDE_VTA_EXP.

 $Id: brede_exp.m,v 1.11 2005/01/21 13:55:29 fnielsen Exp $

CROSS-REFERENCE INFORMATION ^

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