brede_mat

(export/brede/brede_mat.m)

Function Synopsis

varargout = brede_mat(varargin)

Help text

 brede_mat            - Overview over 'mat' functions

       function brede_mat
       function brede_mat(M)

       Input: M     'Mat' structure

       This function presently opens a graphical user interface for
       'mat' structures.

       Other 'mat' functions:
         brede_mat_2mat2html     - Convert two matrices to HTML
         brede_mat_abs           - Absolute value 
         brede_mat_add           - Add two matrices
         brede_mat_ascendants    - Ascendants in adjacency matrix  
         brede_mat_binarize      - Convert matrix to ones and zeros
         brede_mat_cat           - Concatenation of two 'mat'
                                   structures        
         brede_mat_cat_columns   - Column concatenation
         brede_mat_cca           - Canonical correlation analysis
         brede_mat_center        - Centering, ie, extract mean
         brede_mat_conncomp      - Connected component analysis
         brede_mat_corrcoef      - Correlation coefficient
         brede_mat_cov           - Covariance
         brede_mat_descendants   - Find descendants to a node
         brede_mat_divide        - Element-wise division
         brede_mat_elemproduct   - Element-wise product
         brede_mat_elimsingle    - Eliminate single instances
         brede_mat_elimstop      - Eliminate stop words
         brede_mat_elimzero      - Eliminate zero instances
         brede_mat_getrows       - Extract rows
         brede_mat_glm           - General linear model
         brede_mat_glm_est       - General linear model estimation
         brede_mat_glm_testable  - General linear hypothesis testability
         brede_mat_hkmc          - Hierarchical K-means clustering
         brede_mat_hnmf          - Hierarchical NMF
         brede_mat_hubauthority  - Return hub and authority, ie, first
                                   two singular vectors
         brede_mat_ibfa          - Interbattery factor analysis
         brede_mat_ica           - Independent component analysis
         brede_mat_inv           - Matrix inversion
         brede_mat_kmc           - K-means clustering
         brede_mat_knn           - K-nearest neighbor
         brede_mat_loganplot     - Logan plot analysis
         brede_mat_mat2html      - Construct HTML.
         brede_mat_mat2mat       - Convert or 'clean' to mat structure
         brede_mat_match         - Match columns or rows of 'mat' structures.
         brede_mat_mean          - Row or column mean
         brede_mat_minus         - Difference
         brede_mat_mutualinfo    - Mutual information
         brede_mat_nls_est       - Non-negative least squares estimation
         brede_mat_nmf           - Non-negative matrix factorization
         brede_mat_novelty       - Novelty/outlierness
         brede_mat_permute       - Permute 
         brede_mat_partcorrcoef  - Partial correlation coefficient
         brede_mat_partcorrcoef_test  - Test of partial correlation
         brede_mat_plot_bullseye - Plot a bullseye plot
         brede_mat_plot_count    - Plot count
         brede_mat_plot_mds      - MDS plot
         brede_mat_plot_path     - Plot path between two nodes
         brede_mat_product       - Multiply two matrices
         brede_mat_scale         - Scale matrix
         brede_mat_sort          - Sort rows
         brede_mat_std           - Standard deviation
         brede_mat_submatrix     - Extract submatrix from full matrix
         brede_mat_sum           - Row or column sum
         brede_mat_svd           - Singular value decomposition
         brede_mat_transpose     - Transpose matrix
         brede_mat_wta           - Winner take all function

         brede_cocomac_connectivity2mat - Convert CoCoMac data.
         brede_read_air          - Read AIR file
         brede_read_csv2mat      - Read comma-separated values file 
         brede_read_spm_mat      - Read SPM transformation matrix
         brede_read_spm_sn_affine - Read SPM transformation matrix
         brede_read_txtmatrix    - Read matrix from text files
         brede_ui_mat            - Graphical interface to 'mat'
         brede_ui_mat            - Interface for partial correlation 
         brede_write_mat2csv     - Write comma-separated values file
  
       The 'mat' structure contains an annotated 2D matrix. The 2D
       matrix is available in the 'matrix' field. The rows and
       columns might be any type, eg, an other kind of 
       structure, but the number of elements should be the same as
       the rows and columns dimension of the M.matrix field. The
       M.type field might be set for 'convenience'.

       The brede_ui_mat function creates a graphical user interface
       for viewing and handle the 'mat' structure.

       'Mat' structure:
         M.matrix        2D matrix
         M.columns       Column description (any type)
         M.rows          Row description (any type)
         M.description   Textual description (a string)
         M.type = 'mat'  Structure identifier

       See also BREDE, BREDE_STR, BREDE_MAT_2MAT2HTML, BREDE_MAT_ABS,
                BREDE_MAT_ADD, BREDE_MAT_ASCENDANTS, 
                BREDE_MAT_BINARIZE, BREDE_MAT_CAT,
                BREDE_MAT_CAT_COLUMNS, BREDE_MAT_CCA,
                BREDE_MAT_CONNCOMP, BREDE_MAT_CORRCOEF,
                BREDE_MAT_COV, BREDE_MAT_DESCENDANTS,
                BREDE_MAT_DIVIDE, BREDE_MAT_ELEMPRODUCT,
                BREDE_MAT_ELIMSINGLE, BREDE_MAT_ELIMSTOP,  
                BREDE_MAT_GETROWS, BREDE_MAT_GLM, BREDE_MAT_GLM_EST,
                BREDE_MAT_GLM_TESTABLE, BREDE_MAT_HUBAUTHORITY,
                BREDE_MAT_IBFA, BREDE_MAT_ICA, 
                BREDE_MAT_INV, BREDE_MAT_KMC, BREDE_MAT_KNN,
                BREDE_MAT_LOGANPLOT, BREDE_MAT_MAT2HTML, 
                BREDE_MAT_MAT2MAT, BREDE_MAT_MATCH, BREDE_MAT_MEAN,
                BREDE_MAT_MINUS, BREDE_MAT_MUTUALINFO,
                BREDE_MAT_NLS_EST, BREDE_MAT_NMF, 
                BREDE_MAT_PARTCORRCOEF, BREDE_MAT_PERMUTE,
                BREDE_MAT_PLOT_BULLSEYE, BREDE_MAT_PLOT_COUNT,
                BREDE_MAT_PLOT_MDS, BREDE_MAT_PLOT_PATH,
                BREDE_MAT_PRODUCT, BREDE_MAT_SCALE, BREDE_MAT_SORT,
                BREDE_MAT_STD, BREDE_MAT_SUBMATRIX, BREDE_MAT_SUM,
                BREDE_MAT_SVD, BREDE_MAT_TRANSPOSE, BREDE_MAT_WTA,
                BREDE_COCOMAC_CONNECTIVITY2MAT, BREDE_READ_AIR, 
                BREDE_READ_CSV2MAT, BREDE_READ_SPM_MAT,
                BREDE_READ_SPM_SN_AFFINE, BREDE_READ_TXTMATRIX,
                BREDE_UI_MAT, BREDE_UI_MAT_PARTCORRCOEF,
                BREDE_WRITE_CSV2MAT.   

 $Id: brede_mat.m,v 1.32 2008/06/05 09:54:25 fn Exp $

Cross-Reference Information

brede_mat_mat2matexport/brede/brede_mat_mat2mat.m
brede_struct_guesstypeexport/brede/brede_struct_guesstype.m
brede_ui_mat   export/brede/brede_ui_mat.m

brede_ui_mat   export/brede/brede_ui_mat.m
brede_ui_mat_partcorrcoefexport/brede/brede_ui_mat_partcorrcoef.m