--- brede ---


Filename: ACKNOWLEDGMENTS
Revision 1.1fn 2007/11/21 13:38:32None
Initial version.

Filename: COPYRIGHT
Revision 1.3fnielsen 2004/04/22 10:24:40+50 -7
Updated and added DTU disclaimer.
Revision 1.2fnielsen 2001/05/10 10:27:44+27 -6
Updated the copyright with some suggestions for references.
Revision 1.1fnielsen 2000/11/17 16:09:19None
Initial version.

Filename: INSTALL
Revision 1.2fn 2009/03/17 13:19:47+6 -2
Added note for brede.zip.
Revision 1.1fnielsen 2000/08/28 18:17:29None
Initial version.

Filename: README
Revision 1.5fn 2009/09/30 14:31:58+8 -10
Updated.
Revision 1.4fnielsen 2006/02/08 17:16:54+11 -5
Updated.
Revision 1.3fnielsen 2002/10/23 12:36:43+21 -13
Added reference information.
Revision 1.2fnielsen 2002/01/02 16:19:23+6 -7
Updated.
Revision 1.1fnielsen 2000/08/16 09:30:21None
First version.

Filename: brede.m
Revision 1.37fn 2009/10/15 15:35:08+7 -5
Correction in the handling of 'txt' files input.
Revision 1.36fn 2009/10/15 15:26:14+27 -1
Added code for text files.
Revision 1.35fn 2009/09/30 14:27:51+6 -2
Added ability to handle 'bib' structures.
Revision 1.34fn 2009/03/18 22:24:48+5 -1
Added brede_read_bm_ent functionality.
Revision 1.33fn 2008/09/24 10:09:43+2 -2
Changed to open a cel window rather than a mat window for 'csv' files.
Revision 1.32fn 2008/06/20 09:45:54+17 -2
Extended to handle xls-files.
Revision 1.31fn 2008/06/17 18:45:47+9 -5
Added handling of 'cel' structure.
Revision 1.30fn 2008/04/09 15:48:22+2 -2
Added brede_plot.
Revision 1.29fn 2007/07/24 15:11:31+6 -1
Added handling for 'vols'.
Revision 1.28fn 2007/03/12 11:51:45+5 -4
Added brede_per.
Revision 1.27fn 2006/08/17 12:31:28+4 -1
Implemented handling of 'rois' structures.
Revision 1.26fn 2006/06/30 17:26:27+4 -1
Now calling brede_ui_bibs for 'bibs' structures.
Revision 1.25fnielsen 2006/02/14 15:01:28+30 -24
Changed to call brede_ui_vols when the input is cells of volumes.
Revision 1.24fnielsen 2005/10/04 14:01:51+9 -4
Enabled to handle strings representing CSV-filenames as input.
Revision 1.23fnielsen 2005/10/04 08:18:19+10 -2
Extended to handle numerical matrices as input.
Revision 1.22fnielsen 2005/09/28 15:15:39+4 -1
Extended to handle 'bib' structure as input.
Revision 1.21fnielsen 2005/09/23 17:02:33+3 -7
Changed to use graphical user interface (brede_ui_vol) rather than
plot for volume structures.
Revision 1.20fnielsen 2005/08/16 16:46:40+4 -4
Changed to call brede_ui rather than brede_ta3_frame as default.
Revision 1.19fnielsen 2005/07/01 19:52:29+47 -45
Extended to return output arguments.
Revision 1.18fnielsen 2005/02/02 15:39:50+3 -3
Bugfix: Did not check correctly for volume and xCon.mat input.
Revision 1.17fnielsen 2004/03/30 16:28:11+16 -6
Added roi and ext.
Revision 1.16fnielsen 2004/02/16 14:56:42+16 -1
Implemented handling of volumes passed as cells.
Revision 1.15fnielsen 2004/02/12 16:53:59+37 -3
Extended to handle cells as input.
Revision 1.14fnielsen 2003/12/05 16:12:40+3 -4
Spelling correction.
Revision 1.13fnielsen 2003/12/01 10:08:47+5 -5
Resolved merging conflict.
Revision 1.12fnielsen 2003/11/28 15:33:35+8 -5
Extended help text.
Revision 1.11fnielsen 2003/11/27 12:03:17+6 -1
Added handling of 'sur' structure.
Revision 1.10fnielsen 2003/05/21 15:59:42+20 -1
Extended to handle a filename as input.
Revision 1.9fnielsen 2003/03/04 11:59:14+13 -6
Resolved merging conflict.
Revision 1.8fnielsen 2003/02/18 10:48:54+5 -2
Added more to 'see also' field.
Revision 1.7fnielsen 2002/06/12 06:36:55+10 -3
Extended to handle 'loc' structures as input.
Revision 1.6fnielsen 2002/05/27 17:42:52+2 -2
Bugfix in connection with 'vol' structures: called a non-existing function.
Revision 1.5fnielsen 2002/05/23 14:23:23+38 -6
Extended to read SPM99 table and volume structure.
Revision 1.4fnielsen 2002/05/17 19:36:52+21 -4
Now reading xCon.mat file if present and make a plot.
Revision 1.3fnielsen 2001/05/21 15:47:00+22 -3
Extended the help text.
Revision 1.2fnielsen 2000/09/01 13:07:38+9 -2
Changed to call brede_ta3_frame.
Revision 1.1fnielsen 2000/03/25 02:01:45None
Initial function.

Filename: brede_air.m
Revision 1.2fn 2007/06/07 17:21:49+5 -2
Added references to files.
Revision 1.1fnielsen 2005/07/01 19:53:29None
Initial version.

Filename: brede_bdb.m
Revision 1.8fn 2007/03/13 09:29:12+20 -5
Implemented the 'exp' for the 'type' property.
Revision 1.7fn 2006/11/30 15:20:07+26 -4
Added loading of wopers.xml.
Revision 1.6fn 2006/08/17 10:17:33+32 -18
Extended to handle 'rois' type.
Revision 1.5fn 2006/06/30 17:27:41+4 -2
Bugfix: Did not load and setup for the types 'bibs'.
Revision 1.4fnielsen 2006/02/22 11:45:57+27 -8
Extended with the 'ext' type.
Revision 1.3fnielsen 2006/02/14 18:09:59+14 -1
Extended help text.
Revision 1.2fnielsen 2005/12/05 11:42:30+6 -2
Bugfix: Error inconnection with 'loc' type.
Revision 1.1fnielsen 2005/11/09 15:15:40None
Initial version.

Filename: brede_bib.m
Revision 1.16fnielsen 2006/01/26 19:38:58+4 -2
Added brede_read_bibtex.
Revision 1.15fnielsen 2005/06/27 20:27:37+3 -2
Added brede_read_amat.
Revision 1.14fnielsen 2005/06/09 17:41:05+13 -6
Added functions and cleanup.
Revision 1.13fnielsen 2004/08/18 09:55:12+11 -7
Added fmridcId.
Revision 1.12fnielsen 2004/05/10 15:36:47+2 -1
Added brede_bib_bib2html_fmridcid.
Revision 1.11fnielsen 2003/07/31 10:35:54+3 -2
Added erratumIn field
Revision 1.10fnielsen 2003/07/21 16:18:45+2 -1
Updated with databaseOwner.
Revision 1.9fnielsen 2003/03/20 15:46:46+21 -3
Added to help text.
Revision 1.8fnielsen 2003/02/05 15:04:58+12 -7
Added brede_bib_select.
Extended function description.
Revision 1.7fnielsen 2003/01/22 17:56:26+5 -2
Added brede_bib_bib2mat.
Revision 1.6fnielsen 2002/11/12 18:26:55+2 -1
Added brede_bib_bib2loc.
Revision 1.5fnielsen 2002/10/01 09:38:04+2 -1
Added function.
Revision 1.4fnielsen 2002/09/11 17:44:27+5 -3
Updated.
Revision 1.3fnielsen 2002/07/28 21:41:13+39 -22
Extended.
Revision 1.2fnielsen 2002/06/12 06:37:26+11 -5
Extended the help text.
Revision 1.1fnielsen 2002/02/04 17:33:09None
Initial version.

Filename: brede_bib_ac2bib.m
Revision 1.5fnielsen 2002/08/16 12:48:20+4 -1
Now returning the filename where the information has been read from.
Revision 1.4fnielsen 2001/06/05 01:36:08+5 -2
Bugfix: Changed splitting between references as some reference was not parsed.
Revision 1.3fnielsen 2001/01/24 01:12:09+16 -6
Added reading of affiliation field.
Revision 1.2fnielsen 2001/01/22 00:12:43+32 -7
Extended to read the references.
Revision 1.1fnielsen 2001/01/17 17:35:57None
Initial version.
Does not separate authors
Does not handle references.

Filename: brede_bib_asymmetry.m
Revision 1.1fnielsen 2002/09/18 17:35:53None
Initial version.

Filename: brede_bib_author2author.m
Revision 1.2fnielsen 2005/02/07 18:56:04+30 -18
Changed the functional interface: Now returns cell of structures.
Now does not overwrite the Author field when it is defined.
Revision 1.1fnielsen 2001/06/19 10:44:43None
Initial version.

Filename: brede_bib_author2txt.m
Revision 1.1fnielsen 2002/01/08 20:59:08None
Initial version.

Filename: brede_bib_authors2html.m
Revision 1.4fnielsen 2005/10/07 13:07:02+7 -4
Changes: Now does not generate a '.' character at the end of the
names.
Revision 1.3fnielsen 2004/11/17 09:46:41+2 -2
Bugfix: Could not read the 'author' field if it was a cellstring.
Revision 1.2fnielsen 2004/09/16 11:07:48+3 -3
Bugfix: Did not correctly check for an emtpy woper field.
Revision 1.1fnielsen 2004/07/09 14:44:03None
Initial version.

Filename: brede_bib_bib2bib.m
Revision 1.3fnielsen 2003/04/14 23:24:41+84 -19
Extended with output property.
Revision 1.2fnielsen 2002/07/28 21:40:51+3 -3
Bugfix: Did not work for cells.
Revision 1.1fnielsen 2002/07/19 16:39:54None
Initial version: constructed from brede_exp_exp2exp.

Filename: brede_bib_bib2bibtex.m
Revision 1.10fnielsen 2004/04/14 12:11:24+6 -2
Now removes the punctum at the end of the sentence.
Revision 1.9fnielsen 2004/04/14 12:08:50+2 -2
Missing semicolon.
Revision 1.8fnielsen 2004/03/17 14:49:40+16 -5
Changed formatting of the output.
Revision 1.7fnielsen 2003/07/24 19:12:46+2 -43
Removed some of the code to brede_bib_bib2citekey.
Revision 1.6fnielsen 2002/10/28 16:38:27+2 -2
Bugfix: Did not construct keyname properly.
Revision 1.5fnielsen 2002/10/21 13:45:02+84 -34
Bugfix: Did not work when the fields where cells.
Revision 1.4fnielsen 2002/08/11 23:00:13+4 -2
Added a check for the month field.
Revision 1.3fnielsen 2002/07/23 17:08:41+35 -12
Changed identation.
Extended to use Author field for the key.
Revision 1.2fnielsen 2002/07/23 15:45:04+27 -7
Extended a bit.
Revision 1.1fnielsen 2002/06/13 18:58:51None
Draft version.

Filename: brede_bib_bib2citekey.m
Revision 1.4fnielsen 2003/10/03 12:49:21+12 -2
Bugfix: did not work if there were a final dash in the first word of
the title.
Revision 1.3fnielsen 2003/07/28 16:49:51+18 -5
Extended to handle space in surnames (van and von)
Bugfix in handle of title with '['.
Revision 1.2fnielsen 2003/07/24 14:57:00+34 -2
Added proper format of title word in connection with stop words and
non alphanumeric characters.
Revision 1.1fnielsen 2003/07/24 14:28:34None
Initial version.

Filename: brede_bib_bib2exp.m
Revision 1.3fnielsen 2002/11/25 17:47:03+5 -1
Added error message
Added the addition of type='exp'
Revision 1.2fnielsen 2002/08/27 15:43:50+3 -3
Corrected the help text slightly.
Revision 1.1fnielsen 2002/08/27 15:43:04None
Initial version.

Filename: brede_bib_bib2html.m
Revision 1.40fnielsen 2005/10/07 13:03:59+7 -4
Extension to generate a URL if present.
Revision 1.39fnielsen 2005/06/27 20:29:35+3 -3
Bugfix: Did not work if 'title' field was not defined.
Revision 1.38fnielsen 2005/01/13 16:41:48+2 -2
Correction: brede_vol_vol2mat has been changed to be case sensitive on
the 'rows' field.
Revision 1.37fnielsen 2004/11/16 19:21:26+2 -1
Added max iterations for NMF generation.
Revision 1.36fnielsen 2004/09/23 16:25:30+7 -3
Bugfix: Did not work if filenames was empty.
Revision 1.35fnielsen 2004/09/22 17:02:15+18 -24
Changed the citation format to make the title a hyperlink if the
target is known.
Revision 1.34fnielsen 2004/09/22 15:43:36+158 -180
Changed the generation of PNG files and info.
Revision 1.33fnielsen 2004/09/21 19:05:13+3 -3
Change size of generated PNG files.
Revision 1.32fnielsen 2004/09/06 18:50:11+7 -5
Bugfix: did not produce proper hyperlinks to Exp HTML page if there
were no WOEXP in the Exp field.
Revision 1.31fnielsen 2004/08/23 17:28:35+3 -2
Changed to sqrt normalization.
Revision 1.30fnielsen 2004/07/09 14:44:33+3 -24
Extended to use the woper field in the 'Author' structure via the
brede_bib_authors2html function.
Revision 1.29fnielsen 2004/05/27 17:56:08+4 -4
Correction erroneous HTML generation.
Revision 1.28fnielsen 2004/04/02 16:48:00+16 -12
Extended to handle case where some of the fields are not defined.
Revision 1.27fnielsen 2004/03/25 18:27:58+45 -29
Bugfix: workaround for strange behavior of strmatch in connection with
the 'generate' property.
Bugfix: Did not work if the wobib field was not set.
Revision 1.26fnielsen 2004/02/23 12:53:28+2 -2
Bugfix: Did not produce correct error message with erroneous input.
Revision 1.25fnielsen 2004/02/03 15:24:49+2 -2
Changed the call to the distance function since the distance type has
been renamed.
Revision 1.24fnielsen 2003/07/23 15:24:09+2 -2
Bugfix: Did work it brainMapPaperId was a cellstring.
Revision 1.23fnielsen 2003/04/11 14:01:42+59 -43
Added the directoryBar property.
Revision 1.22fnielsen 2003/04/07 17:19:12+14 -1
Now constructing the URL for 'all'.
Revision 1.21fnielsen 2003/04/04 10:03:38+22 -8
Bugfix: did not include statistics link in the directorybar.
Extended to produce novelty index.
Revision 1.20fnielsen 2003/04/03 17:28:40+123 -118
Added construction of NMF page
Change ICA index: now calls brede_mat_ica for independent component
analysis and brede_mat_2mat2html to convert the results to HTML.
Change format of directorybar.
Revision 1.19fnielsen 2003/03/26 13:42:52+9 -10
Turned off the visibility of the figure with plot
Revision 1.18fnielsen 2003/03/20 15:47:32+7 -4
Correction in the generation of the title of the HTML page.
Revision 1.17fnielsen 2003/02/26 19:09:32+2 -2
Bugfix: Did not construct title correctly.
Revision 1.16fnielsen 2003/02/21 17:59:36+67 -23
Changed to write author, year and title in the title of the web page
Extended to used the DOI field
Extended to make a scree plot for the SVD analysis
Changes due to changes in brede_mat_svd.
Revision 1.15fnielsen 2002/12/06 16:57:11+2 -2
Bugfix: ICA did not work if SVD was not run.
Revision 1.14fnielsen 2002/11/12 18:39:51+163 -71
Added statistics and author index.
Added Filenames and Generate properties.
Revision 1.13fnielsen 2002/11/05 13:45:43+38 -4
Added list with experiments.
Revision 1.12fnielsen 2002/10/29 11:48:18+2 -2
Spell correction in help text.
Revision 1.11fnielsen 2002/10/28 16:43:19+17 -5
Added hyperlink for WOBIB ID.
Revision 1.10fnielsen 2002/10/21 15:14:58+122 -4
Added ICA index.
Revision 1.9fnielsen 2002/09/27 13:32:27+27 -4
Resolved mergin conflict.
Revision 1.8fnielsen 2002/09/24 14:12:48+2 -2
Bugfix: Wrong link for antirelated volumes.
Revision 1.7fnielsen 2002/09/19 10:04:47+3 -3
Bugfix: Did not work when fields contain '%' character
Now making cornercubes.
Revision 1.6fnielsen 2002/09/18 17:30:43+207 -20
Implemented VRML, Asymmetry and SVD index.
Revision 1.5fnielsen 2002/09/18 13:08:09+209 -29
Extended with 'files' as 'output'.
Revision 1.4fnielsen 2002/08/27 16:27:20+53 -10
Bugfix/extention to handle cell arrays.
Revision 1.3fnielsen 2002/08/22 16:27:54+33 -25
Added authors, title and BrainMapId.
Revision 1.2fnielsen 2002/08/16 12:44:18+25 -9
Extended to handle numeric and string for years and number.
Revision 1.1fnielsen 2002/01/14 18:10:59None
Initial version.

Filename: brede_bib_bib2html_author.m
Revision 1.4fnielsen 2003/04/11 14:03:57+6 -5
Extended DirectoryBar property to handle cellstring.
Revision 1.3fnielsen 2002/11/12 14:44:15+83 -22
Initial version.
Revision 1.2fnielsen 2002/11/08 09:09:02+7 -6
Draft checkin.
Revision 1.1fnielsen 2002/11/06 17:04:36None
Draft version.

Filename: brede_bib_bib2html_fmridcid.m
Revision 1.1fnielsen 2004/05/10 15:36:04None
Initial version.

Filename: brede_bib_bib2html_stat.m
Revision 1.17fnielsen 2005/06/27 20:28:36+99 -93
Bugfix: Did not work if some fields were not defined.
Revision 1.16fnielsen 2005/06/27 18:25:25+3 -3
Correction: Did not work if 'year' field was a number.
Revision 1.15fnielsen 2005/02/04 18:19:04+29 -1
Added generation of country statistics.
Revision 1.14fnielsen 2004/09/22 14:55:22+13 -6
Changed level of info.
Revision 1.13fnielsen 2004/09/22 14:26:01+42 -28
Changes in the way the PNG files are generated.
Revision 1.12fnielsen 2004/09/21 17:33:38+13 -11
Changed size of PNG file.
Revision 1.11fnielsen 2004/04/02 16:46:53+2 -2
Extended to handle cases were the spatialFilter for the 'exp'
structure has not been set.
Revision 1.10fnielsen 2003/05/12 13:15:02+34 -21
Changed to only report the 15 top items in the histograms to enhance
the readability.
Revision 1.9fnielsen 2003/04/11 14:04:37+6 -5
Extended DirectoryBar property to handle cellstring.
Revision 1.8fnielsen 2003/04/04 10:02:23+3 -3
Made the figure with the plot invisible.
Revision 1.7fnielsen 2002/11/20 14:26:08+3 -4
Bugfix: Number of subjects was not computed correctly.
Revision 1.6fnielsen 2002/11/20 13:37:44+3 -2
Changed to use its own figure (handle).
Revision 1.5fnielsen 2002/11/15 18:33:10+30 -1
Added number of subjects statistics.
Revision 1.4fnielsen 2002/11/15 03:49:27+30 -2
Added spatial filter statistics.
Revision 1.3fnielsen 2002/11/12 14:45:24+96 -4
Added Author, labOfExperiment and scanner statistics.
Revision 1.2fnielsen 2002/11/08 16:30:37+103 -48
Added modality and analysis software statistics.
Revision 1.1fnielsen 2002/11/08 09:13:36None
Initial version.

Filename: brede_bib_bib2loc.m
Revision 1.2fnielsen 2002/11/12 18:39:06+5 -1
Added woexp and wobib identifier.
Revision 1.1fnielsen 2002/11/12 18:26:06None
Initial version.

Filename: brede_bib_bib2mat.m
Revision 1.21fn 2007/11/07 12:24:30+7 -4
Extension of amount in 'info' messages.
Revision 1.20fnielsen 2004/09/22 15:38:56+3 -3
Changed help text for info property.
Revision 1.19fnielsen 2004/09/22 15:38:19+2 -2
Changed default info.
Revision 1.18fnielsen 2004/09/14 17:07:05+8 -2
Extended with Exp x woroi type.
Revision 1.17fnielsen 2004/02/23 17:59:37+5 -5
Implemented 'sqrt' for normalize.
Revision 1.16fnielsen 2004/02/10 23:09:47+42 -4
Added the 'info', 'normalizeExp' and 'NormalizeLoc' properties.
Revision 1.15fnielsen 2004/01/30 19:43:16+47 -11
Implemented the template property.
Revision 1.14fnielsen 2003/06/06 00:02:44+25 -7
Added the voxelizationsigma property.
Revision 1.13fnielsen 2003/04/04 00:58:24+6 -1
Extended help text.
Revision 1.12fnielsen 2003/03/26 22:07:19+2 -1
Now copying the 'bib' structures to the rows field of the 'mat'
structure for the voxelization.
Revision 1.11fnielsen 2003/03/26 21:57:27+12 -3
Added voxelization with Exp.Loc.coord to 'type' property.
Revision 1.10fnielsen 2003/02/05 18:47:26+24 -4
Extended to set the description field.
Revision 1.9fnielsen 2003/01/29 18:35:13+27 -6
Added generation of abstracts.
Revision 1.8fnielsen 2003/01/29 13:22:29+35 -6
Added 'keywords' as a possibility to construct the matrix from.
Bugfix: coauthor did not work if there was no author.
Revision 1.7fnielsen 2002/11/11 16:23:40+7 -3
Extended to return first author.
Revision 1.6fnielsen 2002/08/22 12:49:40+6 -5
Extended help text with proper example.
Revision 1.5fnielsen 2002/08/21 19:28:06+51 -6
Implemented 'Author.keyname x Author(1).keyname' Type.
Revision 1.4fnielsen 2002/08/19 17:23:55+21 -9
Extended to handle cells for Author.keyname type.
Revision 1.3fnielsen 2001/07/11 15:56:07+85 -16
Extended with new 'type's
Revision 1.2fnielsen 2001/06/04 01:16:01+9 -9
Bugfix/change: property Reference.journal changed to References.journal.
Revision 1.1fnielsen 2001/02/01 13:47:17None
Initial version.

Filename: brede_bib_bib2pmid.m
Revision 1.1fnielsen 2002/02/04 17:41:03None
Initial version.

Filename: brede_bib_bib2str.m
Revision 1.5fnielsen 2005/02/07 18:58:23+42 -3
Extended with shortnameyear.
Revision 1.4fnielsen 2004/11/02 17:59:59+5 -3
Code alignment.
Revision 1.3fnielsen 2004/03/25 17:18:06+3 -2
Bugfix: Did not work if there was no authors in the 'bib' structure.
Revision 1.2fnielsen 2003/02/26 18:16:07+2 -2
Bugfix: Did not read title field properly.
Revision 1.1fnielsen 2003/02/21 17:54:04None
Initial version.

Filename: brede_bib_bib2tex.m
Revision 1.1fnielsen 2003/07/24 19:12:19None
Initial version.

Filename: brede_bib_bib2vcard.m
Revision 1.1fnielsen 2003/01/21 15:21:25None
Initial version.

Filename: brede_bib_bib2vol.m
Revision 1.12fnielsen 2005/06/10 18:02:08+8 -7
Extended with new template.
Revision 1.11fnielsen 2005/02/04 10:34:38+5 -5
Errors in help text.
Revision 1.10fnielsen 2004/09/22 14:55:45+13 -3
Changed default info.
Revision 1.9fnielsen 2004/08/23 16:31:27+13 -4
Bugfix: Did not write the correct normalization text in the
description field of the returned vol structures.
Revision 1.8fnielsen 2004/06/02 16:42:23+5 -5
Changed call from brede_loc_vol to brede_loc_loc2vol.
Revision 1.7fnielsen 2004/02/23 17:59:16+7 -5
Implemented 'sqrt' form normalizeExp and normalizeLoc.
Revision 1.6fnielsen 2004/02/10 23:13:38+62 -7
Added the normalizeExp and NormalizeLoc property.
Added waitbar.
Revision 1.5fnielsen 2004/01/30 19:42:52+38 -6
Implemented the 'template' property.
Revision 1.4fnielsen 2003/06/06 00:03:05+35 -2
Added the voxelizationsigma property.
Revision 1.3fnielsen 2003/03/14 15:15:46+10 -3
Changed to return cell arrays instead of arrays.
Now copying the 'bib' input structures to the output.
Revision 1.2fnielsen 2002/09/18 15:29:47+31 -17
Extended to handle multiple 'bib' structures.
Revision 1.1fnielsen 2002/09/11 17:36:47None
Initial version.

Filename: brede_bib_cell2struct.m
Revision 1.1fnielsen 2001/01/22 16:47:43None
Initial version.

Filename: brede_bib_getfield.m
Revision 1.10fnielsen 2003/08/14 15:19:21+11 -19
Extended to return any simple field.
Revision 1.9fnielsen 2002/11/20 18:00:03+2 -2
Changed to return the fields as cellstrings.
Revision 1.8fnielsen 2002/11/11 16:16:04+7 -4
Bugfix: If 'bib' was a cell then a field could not be extracted.
Revision 1.7fnielsen 2002/08/21 18:29:42+15 -9
Bugfix/extension: Now handles cells for Author.keyname.
Revision 1.6fnielsen 2002/08/21 18:12:28+29 -16
Extended help text.
Extended to handle structures.
Revision 1.5fnielsen 2002/08/19 17:22:54+28 -23
Extended to handle cells from the 'Author.keyname' type.
Revision 1.4fnielsen 2002/02/06 10:50:51+71 -6
Extended to be able to return more fields.
Revision 1.3fnielsen 2001/06/04 01:16:50+12 -5
Bugfix/change: Reference.journal changed to References.journal.
Revision 1.2fnielsen 2001/04/28 17:30:18+48 -14
Extended to return more fields.
Revision 1.1fnielsen 2001/01/24 01:46:17None
Initial version.

Filename: brede_bib_journal2journal.m
Revision 1.1fnielsen 2001/02/01 10:23:16None
Initial version.

Filename: brede_bib_medline2bib.m
Revision 1.12fn 2007/11/07 11:19:07+15 -3
Added reading (and ignoring) of new fields.
Revision 1.11fn 2007/11/07 11:08:42+150 -150
New code indentation.
Revision 1.10fnielsen 2004/07/09 14:13:00+2 -2
Bugfix.
Revision 1.9fnielsen 2004/07/09 13:53:56+30 -17
Extended to handle MEDLINE records that does not contain the 'FAU' but
only the 'AU'.
Revision 1.8fnielsen 2003/07/31 10:36:04+3 -1
Added erratumIn field.
Revision 1.7fnielsen 2003/07/21 16:17:44+10 -2
Implementing reading of new PudMed fields.
Now returns databaseOwner.
Revision 1.6fnielsen 2003/03/20 15:48:40+4 -2
Extended to handle the CIN field.
Revision 1.5fnielsen 2002/07/25 18:09:59+3 -1
Added ID: This grant number is presently ignored.
Revision 1.4fnielsen 2002/07/23 16:41:23+37 -5
Extended with CAS RN and ECN.
Added proper parsing of names so the 'Author' field is set.
Revision 1.3fnielsen 2002/07/22 11:05:36+58 -14
Extended to read more of the MEDLINE fields.
Bugfix: Could not handle trailing line feeds.
Revision 1.2fnielsen 2002/06/12 06:39:02+11 -5
Now returning the type of the structure returned
Changed to using the FAU field rather than the AU field for authors
Changed to write all authors to the 'authors' field rather than the 'author' field.
Revision 1.1fnielsen 2000/11/30 00:01:07None
Initial version.

Filename: brede_bib_merge.m
Revision 1.5fnielsen 2002/08/22 09:27:09+3 -3
Bugfix: did not work for empty cells.
Revision 1.4fnielsen 2002/08/19 16:34:38+17 -6
Extended to handle structures.
Revision 1.3fnielsen 2002/01/14 16:39:35+2 -2
Corrected grammar in the help text.
Revision 1.2fnielsen 2001/04/28 17:33:30+8 -4
Bugfix.
Revision 1.1fnielsen 2000/12/07 11:21:26None
Initial version.

Filename: brede_bib_pmid2wobib.m
Revision 1.1fnielsen 2003/08/01 19:04:15None
Initial working draft.

Filename: brede_bib_ref2bib.m
Revision 1.6fnielsen 2002/08/16 12:50:59+22 -4
Bugfix?
Revision 1.5fnielsen 2001/07/16 14:11:07+13 -2
Bugfix: Did not read all authors due to variation in NeuroImage format.
Revision 1.4fnielsen 2001/07/16 13:40:36+11 -4
Added dehtml of the author names.
Revision 1.3fnielsen 2001/06/05 01:35:08+2 -2
Bugfix: Did not work for some entries.
Revision 1.2fnielsen 2001/04/28 17:36:26+24 -6
Extended with deblanking.
Revision 1.1fnielsen 2001/01/22 01:27:05None
Initial version.

Filename: brede_bib_select.m
Revision 1.4fnielsen 2003/08/20 15:30:16+5 -5
Implemented the INDEX as select.
Revision 1.3fnielsen 2003/08/01 19:04:34+30 -4
Implemented the ==.
Revision 1.2fnielsen 2003/03/26 14:03:08+17 -21
Extended to handle more general where and select properties.
Revision 1.1fnielsen 2003/02/05 15:06:58None
Initial version.

Filename: brede_bm.m
Revision 1.5fn 2009/03/18 22:25:43+4 -2
Added brede_read_bm_ent.
Revision 1.4fnielsen 2003/02/20 19:43:44+7 -2
Spelling correction and addition of reference.
Revision 1.3fnielsen 2002/08/22 10:58:13+17 -21
Added an extra function.
Revision 1.2fnielsen 2002/06/12 20:18:34+13 -3
Added brede_bm_expbib2exp.
Revision 1.1fnielsen 2002/01/08 14:13:40None
Initial version.

Filename: brede_bm_correct_exp.m
Revision 1.5fnielsen 2002/11/08 11:31:27+12 -4
Correction for paper 127.
No correction for an outlier in paper 90. Added a comment.
Revision 1.4fnielsen 2002/10/31 12:06:39+8 -11
New corrections.
Revision 1.3fnielsen 2002/10/31 01:07:44+10 -2
Added warning for caudate outliers.
Revision 1.2fnielsen 2002/06/25 21:22:41+7 -1
Added two new corrections in modality.
Revision 1.1fnielsen 2002/06/12 12:51:40None
Initial version. Not all correction are applied.

Filename: brede_bm_exp2exp.m
Revision 1.6fnielsen 2002/07/24 11:36:31+4 -2
Extended the help text.
Revision 1.5fnielsen 2002/06/12 20:18:08+468 -291
Implemented parsing of Task States
Extended to be able to parse multiple files.
Revision 1.4fnielsen 2002/02/06 09:31:56+61 -3
Enabled it to read several remaining field.
Revision 1.3fnielsen 2001/04/28 17:37:32+4 -2
Bugfix.
Revision 1.2fnielsen 2001/04/09 19:09:47+16 -4
Bugfix: parsing of title and experiment-id did not work
Updated with type field.
Revision 1.1fnielsen 2001/04/09 01:02:53None
First draft version: not all fields are read.

Filename: brede_bm_expbib2exp.m
Revision 1.1fnielsen 2002/06/12 14:38:58None
Initial version.

Filename: brede_bm_get_exp.m
Revision 1.6fnielsen 2002/07/24 11:35:37+11 -10
Extended the help text.
Revision 1.5fnielsen 2001/04/28 17:38:22+7 -7
Changed formatting in help text.
Revision 1.4fnielsen 1999/05/06 22:41:05+34 -20
Bugfixes in connection with handling of unusual BrainMap webpages.
Revision 1.3fnielsen 1999/05/06 16:47:30+173 -4
Extended with the 'bibstruct' ability.
Revision 1.2fnielsen 1999/05/06 08:12:20+94 -13
Extended to handle properties.
Revision 1.1fnielsen 1999/02/19 17:17:51None
Initial version

Filename: brede_bm_get_loc.m
Revision 1.2fn 2008/03/11 20:49:27+9 -5
Adjustment in the help text.
Revision 1.1fnielsen 1999/02/19 17:18:06None
Initial version

Filename: brede_bm_get_paper.m
Revision 1.8fnielsen 2001/04/28 17:39:37+49 -197
Implemented recursive retrieval.
Revision 1.7fnielsen 2000/12/04 16:57:18+51 -33
Slightly updated to use brede_web_url
Revision 1.6fnielsen 1999/05/07 16:49:17+11 -9
Bugfixes in connection unusual Experiments
Revision 1.5fnielsen 1999/05/06 22:41:58+44 -13
Extended to download the Experiment.
Revision 1.4fnielsen 1999/05/05 14:45:44+179 -17
Extended to return HTML and Bibstruct.
Revision 1.3fnielsen 1999/03/18 14:58:49+33 -1
Implemented parsing of the property.
Revision 1.2fnielsen 1999/02/19 16:34:39+45 -11
Implemented wget method and telnet.
Changed the userid from a property ot a normal argument.
Revision 1.1fnielsen 1998/10/12 19:17:37None
Draft version

Filename: brede_bm_paper2abstr.m
Revision 1.1fnielsen 2002/01/08 14:08:09None
Renamed from brede_bmt_abstract.m

Filename: brede_bm_paper2bib.m
Revision 1.9fnielsen 2003/04/14 22:27:51+16 -10
Extended the example.
Revision 1.8fnielsen 2002/06/12 20:21:48+8 -7
Changed to write authors to 'authors' field.
Changed to set the 'type' field.
Revision 1.7fnielsen 2002/06/12 06:43:08+99 -74
Extended to handle multiple files.
Changed the field publicationtype to publicationType and brainmapPaperId to brainMapPaperId.
Revision 1.6fnielsen 2002/02/06 09:32:48+2 -2
Changed case publicationtype to publicationType.
Revision 1.5fnielsen 2000/12/06 17:56:51+7 -5
Bugfix in connection with citation
Revision 1.4fnielsen 2000/12/06 14:17:25+206 -133
Implemented 'tabulate' and 'tabulatefile' input method.
Revision 1.3fnielsen 2000/12/06 11:50:12+38 -15
Added the parsing of publication type
Extended the parsing of authors by using brede_str_author2author.
Revision 1.2fnielsen 2000/12/05 13:25:50+24 -22
Bugfix in connection with extraction of volume.
Revision 1.1fnielsen 2000/12/05 00:25:02None
Initial version.

Filename: brede_bm_url.m
Revision 1.6fnielsen 2002/01/08 14:12:21+2 -2
Correct spelling mistake in the help text.
Revision 1.5fnielsen 2001/05/21 13:44:19+21 -5
Extended the help text.
Revision 1.4fnielsen 2001/04/28 17:26:10+11 -5
Extended to return URL for RIC.
Revision 1.3fnielsen 2001/04/09 19:08:58+57 -8
Updated with the URL for the database.
Revision 1.2fnielsen 2000/12/04 15:26:41+29 -7
Changed the URL as the BrainMap server has changed.
Revision 1.1fnielsen 1999/05/18 19:48:29None
Initial version

Filename: brede_bt_get_entry.m
Revision 1.4fnielsen 2006/01/26 19:39:59+43 -4
Implemented 'info' property.
Change display of debug information.
Revision 1.3fnielsen 1999/04/15 14:17:15+26 -16
Made it a bit faster after profiling.
Revision 1.2fnielsen 1999/04/09 14:11:27+74 -74
EOF bug fix and now reading all entries.
Revision 1.1fnielsen 1998/10/12 16:26:05None
Initial version

Filename: brede_cdf.m
Revision 1.1fn 2008/05/29 21:26:49None
Initial version.

Filename: brede_cdf_bin.m
Revision 1.1fnielsen 2002/05/23 15:44:47None
Initial version. Taken from lyngy_cdf_bin.

Filename: brede_cdf_chi2.m
Revision 1.2fnielsen 2004/11/17 16:43:08+6 -4
Extended to be able to handle negative numbers.
Revision 1.1fnielsen 2001/05/11 13:28:50None
Initial version.

Filename: brede_cdf_f.m
Revision 1.5fn 2008/02/05 20:54:46+4 -2
Bugfix: Did not work if some elements were NaN.
Revision 1.4fn 2007/07/02 15:43:48+12 -4
Added functionality to handle the case where the second degrees of
freedom is infinite.
Revision 1.3fnielsen 2005/03/17 16:54:08+1 -4
Bugfix/change: could not handle F-values that were negative. Now
returning 0 for negative F-values.
Revision 1.2fnielsen 2005/02/03 20:40:31+11 -6
Changed to return NaN if the degrees of freedom is below 0.
Revision 1.1fnielsen 2003/05/14 16:18:16None
Initial version.

Filename: brede_cdf_gauss.m
Revision 1.1fnielsen 2003/08/14 12:20:57None
Initial version.

Filename: brede_cdf_gaussianratio.m
Revision 1.1fn 2008/05/29 21:23:12None
Initial version.

Filename: brede_cdf_hypergeo.m
Revision 1.3fnielsen 2006/02/14 15:23:44+2 -3
Correction in help text.
Revision 1.2fnielsen 2003/08/15 14:05:22+8 -5
Enabled vectorial input for the x variable.
Revision 1.1fnielsen 2003/03/05 00:44:04None
Initial version.

Filename: brede_cdf_lta2twotailed.m
Revision 1.1fnielsen 2004/11/11 21:53:42None
Initial version.

Filename: brede_cdf_ncf.m
Revision 1.1fnielsen 2004/08/31 16:08:01None
Initial version.

Filename: brede_cdf_r.m
Revision 1.1fnielsen 2004/08/31 14:31:11None
Initial version.

Filename: brede_cdf_rank.m
Revision 1.2fnielsen 2005/08/16 18:53:40+7 -5
Enable to have vectorial and matrix input.
Revision 1.1fnielsen 2005/06/03 16:35:04None
Initial version.

Filename: brede_cdf_t.m
Revision 1.6fn 2006/10/08 16:47:16+14 -7
Bugfix/Extension to handle zero degrees of freedom.
Revision 1.5fnielsen 2005/01/07 18:48:17+6 -3
Changed to handle NaN elements faster.
Revision 1.4fnielsen 2004/10/12 23:14:36+16 -8
Extended with my and Sigma input arguments.
Revision 1.3fnielsen 2004/09/15 13:36:17+14 -7
Made it much more efficient.
Revision 1.2fnielsen 2004/06/30 17:15:04+7 -4
Added a test for the input.
Revision 1.1fnielsen 2004/06/30 17:10:52None
Initial version.

Filename: brede_cel.m
Revision 1.4fn 2008/06/12 17:03:57+6 -3
Added two functions.
Revision 1.3fn 2008/06/12 15:28:38+4 -2
Added brede_mat_mat2cel.
Revision 1.2fn 2008/03/17 10:20:19+4 -3
Added brede_cel_cel2mat.
Revision 1.1fn 2008/02/12 09:27:16None
Initial version.

Filename: brede_cel_cel2cel.m
Revision 1.2fn 2008/05/30 14:57:20+6 -2
Added support for input with 'cell' field defined.
Revision 1.1fn 2008/01/29 13:23:30None
Initial version.

Filename: brede_cel_cel2mat.m
Revision 1.4fn 2008/06/12 17:04:44+72 -48
Changed to return all columns and set unconvertable columns to NaN.
Revision 1.3fn 2008/06/11 10:49:14+17 -3
Bugfix in connection with empty elements.
Revision 1.2fn 2008/06/11 09:57:49+71 -23
Bugfix and extensions to handle different case of cell elements.
Revision 1.1fn 2008/03/17 10:18:35None
Initial version.

Filename: brede_cel_genotype2mat.m
Revision 1.11fn 2009/07/28 16:47:00+6 -1
Added more to the help text.
Revision 1.10fn 2009/04/30 17:10:17+10 -7
Correction in setting in the column field for 1polymorphism1col in the
case of non-triallelic polymorphisms.
Revision 1.9fn 2008/06/20 15:18:29+52 -22
Bugfix: Did not work with elements NaN in interactions type.
Revision 1.8fn 2008/06/17 18:27:47+12 -2
Bugfix: Did not work with '1genotype1coli' for NaN (missing data).
Revision 1.7fn 2008/06/13 17:02:03+22 -12
Partial implementation of missing elements.
Revision 1.6fn 2008/06/12 17:34:33+13 -13
Changed functional interface: Change genetype to genotype.
Revision 1.5fn 2008/05/30 15:17:45+22 -16
Change in interface: Changed 1allele to 1genetype.
Revision 1.4fn 2008/05/29 21:18:36+44 -5
Added interaction versions of 1polymorphism1col.
Revision 1.3fn 2008/05/29 18:23:58+46 -6
Implemented the 1polymorphism1col type.
Revision 1.2fn 2008/02/19 16:57:47+146 -9
Implemented 1allel1coli type.
Revision 1.1fn 2008/02/05 17:05:55None
Initial version.

Filename: brede_cel_match.m
Revision 1.1fn 2009/04/30 15:52:41None
Initial version.

Filename: brede_cel_subcell.m
Revision 1.1fn 2008/01/29 12:26:26None
Initial version.

Filename: brede_cel_transpose.m
Revision 1.1fn 2008/06/12 17:02:44None
Initial version

Filename: brede_cocomac_connectivity2mat.m
Revision 1.6fnielsen 2006/03/06 01:46:58+3 -3
Correction: Did not write warning about missing WOROI match.
Revision 1.5fnielsen 2006/02/14 18:09:40+7 -2
Typo in help text.
Revision 1.4fnielsen 2005/12/05 11:47:06+26 -21
Code changes for speed up.
Revision 1.3fnielsen 2005/11/08 11:07:08+23 -10
Initial working version. Now adds connection strength.
Revision 1.2fnielsen 2005/10/31 19:22:17+50 -8
Extended. Still a draft version.
Revision 1.1fnielsen 2005/10/28 18:50:34None
Initial version.

Filename: brede_cra_est.m
Revision 1.3fnielsen 2002/06/27 19:05:27+40 -18
Implemented the ability to return a structure.
Revision 1.2fnielsen 2001/05/29 18:39:24+43 -11
Added ridge parameters as properties.
Revision 1.1fnielsen 2001/05/15 10:14:59None
Initial version.

Filename: brede_exp.m
Revision 1.11fnielsen 2005/01/21 13:55:29+18 -3
Extended.
Revision 1.10fnielsen 2005/01/05 16:13:29+3 -2
Added BREDE_VTA_EXP.
Revision 1.9fnielsen 2004/09/21 18:55:26+3 -2
Added brede_exp_cat.
Revision 1.8fnielsen 2004/03/25 18:23:16+25 -11
Added items.
Revision 1.7fnielsen 2003/04/04 12:40:16+3 -2
Added brede_exp_exp2vol.
Revision 1.6fnielsen 2003/02/18 10:49:33+4 -4
Language correction.
Revision 1.5fnielsen 2002/11/14 14:08:39+4 -2
Added brede_loc_loc2exp.
Revision 1.4fnielsen 2002/08/22 16:26:47+10 -6
Added a function and 'see also'
Revision 1.3fnielsen 2002/07/28 21:39:52+40 -19
Extended.
Revision 1.2fnielsen 2002/06/12 20:20:47+11 -5
Extended the help text.
Revision 1.1fnielsen 2002/01/02 19:41:37None
Initial version.

Filename: brede_exp_cat.m
Revision 1.1fnielsen 2004/09/21 18:55:06None
Initial version.

Filename: brede_exp_exp2exp.m
Revision 1.3fnielsen 2003/04/14 23:24:16+81 -20
Extended with output property.
Revision 1.2fnielsen 2002/07/19 16:39:12+2 -2
Added a reference.
Revision 1.1fnielsen 2002/06/12 12:06:08None
Initial version.

Filename: brede_exp_exp2html.m
Revision 1.37fn 2006/09/22 16:32:58+2 -3
Now uses the brede_ext_woext2html for the WOEXT index.
Revision 1.36fnielsen 2006/02/14 15:28:54+2 -2
Typo in help text.
Revision 1.35fnielsen 2005/02/24 22:08:47+4 -4
Changed generation of PNG file: did not work on new versions of matlab.
Revision 1.34fnielsen 2005/01/11 17:42:47+2 -2
Changed because of change in brede_vol_vol2mat.
Revision 1.33fnielsen 2004/11/16 19:21:14+3 -2
Added maxiterations for NMF generation.
Revision 1.32fnielsen 2004/09/21 19:03:35+11 -8
Changes around info.
Now cluster with the voxel assignment instead of experiment
assignment.
Revision 1.31fnielsen 2004/09/16 17:51:55+70 -33
Extended with K-means and Exp x woroi matrix.
Revision 1.30fnielsen 2004/09/15 17:05:10+187 -120
Bugfix in connection with generate property.
Extended with K-means clustering.
Extended to handle missing values.
Extended to construct Exp x woroi matrices.
Revision 1.29fnielsen 2004/09/06 19:58:25+23 -13
Made the filename_html 'output' property able to able multiple Exp structures.
Revision 1.28fnielsen 2004/08/23 17:28:55+2 -2
Changed to sqrt normalization.
Revision 1.27fnielsen 2004/07/09 16:51:36+2 -4
Change the location fields that are written.
Revision 1.26fnielsen 2004/06/02 16:43:26+3 -3
Changed call from brede_loc_vol to brede_loc_loc2vol.
Revision 1.25fnielsen 2004/05/18 17:12:40+48 -16
Extended to report more fields.
Revision 1.24fnielsen 2004/05/11 19:13:08+17 -1
Added scanner and measure variable output.
Revision 1.23fnielsen 2004/01/29 17:49:19+21 -5
Implemented partial link rel construction
Revision 1.22fnielsen 2003/07/22 19:18:02+5 -2
Added text link to PNG file.
Revision 1.21fnielsen 2003/04/25 15:20:30+3 -3
Bugfix: Did not format the capsuledescription correctly.
Revision 1.20fnielsen 2003/04/11 13:21:29+59 -44
Added directorybar property.
Revision 1.19fnielsen 2003/04/10 16:37:24+43 -4
Added generation of woext index.
Revision 1.18fnielsen 2003/04/04 10:25:01+27 -109
Extended with generation of novelty index.
Revision 1.17fnielsen 2003/04/03 17:32:16+158 -126
Extended to construct NMF index
Changed to construct alphabetic index by default.
Change ICA index: now calls brede_mat_ica for independent component
analysis and brede_mat_2mat2html for construction of HTML pages.
Changed format on directory bar.
Revision 1.16fnielsen 2003/03/20 15:48:08+11 -2
Changes in the generation of the title of the web-page.
Revision 1.15fnielsen 2003/02/21 18:30:38+6 -6
Changes in relation to the change in brede_mat_svd.
Revision 1.14fnielsen 2003/02/06 23:13:53+62 -7
Added 'file' to 'output' property.
Revision 1.13fnielsen 2002/11/26 16:33:28+51 -10
Bugfix: ICA did not work when there were few examples.
Bugfix: ICA did not work if SVD was not run
Extended to report the behavioral domain and woext.
Revision 1.12fnielsen 2002/11/25 17:45:46+6 -7
Corrected the help text.
Revision 1.11fnielsen 2002/11/20 17:58:19+20 -15
Extended help text.
Changed to use own figure (handle)
Bugfix in connection with handling of the description of the volume.
Changed the format of the location table.
Revision 1.10fnielsen 2002/11/13 18:24:25+39 -8
Added users defined filenames.
Changed to set description field in volumes.
Revision 1.9fnielsen 2002/11/08 09:08:15+5 -4
Bugfix: Did not work if E did not contain a capsuleDescription field.
Revision 1.8fnielsen 2002/11/05 13:45:10+22 -3
Added filename_html.
Revision 1.7fnielsen 2002/11/04 17:38:42+679 -344
Extended with a number of new indices.
Revision 1.6fnielsen 2002/09/18 17:32:00+3 -3
Changed name from unrelated to antirelated.
Revision 1.5fnielsen 2002/09/05 15:23:06+4 -3
Changed to make bigger PNG images.
Revision 1.4fnielsen 2002/09/03 08:28:10+48 -18
Implemented 'generate' property.
Changed text from unrelated to antirelated.
Changed directory bar.
Revision 1.3fnielsen 2002/08/30 14:23:58+157 -26
Added voxelizationsigme.
Using capsule description for headings.
More bibliographic structure
Revision 1.2fnielsen 2002/08/16 12:55:57+44 -31
Now using leave-one-out to determine the kernel size.
Extended to generate cornercube_link.
Revision 1.1fnielsen 2002/05/23 20:07:36None
Initial version.

Filename: brede_exp_exp2html_stat.m
Revision 1.1fnielsen 2002/11/08 09:09:46None
Draft version.

Filename: brede_exp_exp2loc.m
Revision 1.1fnielsen 2003/02/28 16:34:56None
Initial version.

Filename: brede_exp_exp2mat.m
Revision 1.18fn 2007/01/04 23:59:06+34 -12
Now loads the Brede Database taxonomy for external components when
building woext matrix.
Revision 1.17fn 2006/09/21 17:54:59+4 -12
Changed to use brede_roi_woroi2roi.
Revision 1.16fn 2006/07/04 17:36:14+24 -4
Implemented the 'info' property.
Revision 1.15fnielsen 2004/10/06 17:40:28+2 -2
Changed default info.
Revision 1.14fnielsen 2004/09/15 16:58:20+3 -2
Changed description.
Revision 1.13fnielsen 2004/09/14 17:06:42+2 -1
Bugfix with woroi type: Problem if WOROI not defined for location.
Revision 1.12fnielsen 2004/09/09 16:37:55+30 -2
Extended with the 'Roi' property.
Revision 1.11fnielsen 2004/09/08 15:22:21+11 -6
Changed the setting of the columns for 'type'='woroi'.
Revision 1.10fnielsen 2004/06/02 16:44:12+2 -2
Correction in the help text.
Revision 1.9fnielsen 2004/05/19 18:09:47+10 -3
Extension/bugfix to handle string as 'value' in Exp.Loc structure.
Revision 1.8fnielsen 2004/05/18 17:11:34+30 -6
Extended with woroi generation.
Revision 1.7fnielsen 2004/01/29 17:50:01+21 -5
Added description field for voxelization.
Revision 1.6fnielsen 2003/04/10 16:37:42+38 -7
Added the woext type.
Revision 1.5fnielsen 2002/08/30 14:24:48+35 -16
Added voxelization sigma.
Revision 1.4fnielsen 2002/06/27 19:04:39+56 -27
Implemented signtype and normalization.
Revision 1.3fnielsen 2002/06/12 20:19:31+11 -8
Error in help text corrected
Revision 1.2fnielsen 2002/01/14 13:09:40+10 -4
Extended to handle both arrays and cell arrays as input.
Revision 1.1fnielsen 2001/04/28 17:16:05None
Initial version.

Filename: brede_exp_exp2str.m
Revision 1.1fnielsen 2004/06/08 13:30:52None
Initial version.

Filename: brede_exp_exp2tex.m
Revision 1.1fnielsen 2003/07/24 18:53:16None
Initial version.

Filename: brede_exp_exp2vol.m
Revision 1.6fn 2008/12/02 15:22:43+143 -113
Code alignment.
Implemented the Template property.
Revision 1.5fn 2007/03/13 09:33:10+18 -6
Added to the help text.
Resolved problem around merging.
Revision 1.4fn 2007/03/12 08:54:20+16 -3
Added 'info' property.
Revision 1.3fnielsen 2005/06/08 20:22:53+12 -6
Disabled waitbar.
Revision 1.2fnielsen 2004/06/02 16:40:46+6 -5
Changed called from brede_loc_vol to brede_loc_loc2vol.
Revision 1.1fnielsen 2003/04/04 12:40:03None
Initial version.

Filename: brede_exp_extract.m
Revision 1.3fnielsen 2002/06/14 15:39:13+28 -6
Added 'Exist' property.
This function is still not designed appropriately and the functional
interface might change.
Revision 1.2fnielsen 2002/06/14 12:19:27+9 -6
Final working draft.
Revision 1.1fnielsen 2002/06/13 19:02:10None
Draft version.

Filename: brede_exp_getfield.m
Revision 1.5fnielsen 2003/04/08 23:27:58+26 -8
Extended with output property CellStringCell.
Revision 1.4fnielsen 2002/11/26 16:31:50+53 -7
Extended with cellstringfirst.
Revision 1.3fnielsen 2002/11/25 10:54:24+8 -6
Correct function synopsis
Extended to return a simple field.
Changed to return a cellstr.
Revision 1.2fnielsen 2002/08/22 12:52:27+6 -5
Bugfix: Wrong default property.
Revision 1.1fnielsen 2002/08/22 11:51:31None
Initial version.

Filename: brede_exp_outlier.m
Revision 1.1fnielsen 2002/06/27 22:07:56None
Initial version.

Filename: brede_exp_query.m
Revision 1.3fnielsen 2003/05/15 14:16:33+24 -5
Implemented the 'sigma' property.
Revision 1.2fnielsen 2003/01/15 00:59:20+185 -6
First working version.
Revision 1.1fnielsen 2002/12/03 18:38:14None
Initial skeleton.

Filename: brede_exp_select.m
Revision 1.5fnielsen 2004/06/01 20:56:56+5 -191
Changed to call brede_struct_select.
Revision 1.4fnielsen 2004/01/14 18:43:09+9 -4
Added INDEX possibility for select command.
Revision 1.3fnielsen 2003/07/31 15:43:35+38 -54
Extended to handle any(==) in where command.
Revision 1.2fnielsen 2003/04/17 01:15:53+35 -17
Extended to make it possible to use any field with where property.
Revision 1.1fnielsen 2003/04/03 17:27:06None
Initial version.

Filename: brede_ext.m
Revision 1.9fn 2007/07/26 15:42:20+6 -2
Added function.
Revision 1.8fn 2007/07/26 15:18:50+4 -3
Added brede_ext_woext2html.
Revision 1.7fn 2007/03/13 09:48:47+7 -1
Included an example.
Revision 1.6fn 2006/08/15 18:16:03+5 -2
Added wikipedia property.
Revision 1.5fnielsen 2006/03/09 17:33:41+13 -7
Added function.
Revision 1.4fnielsen 2004/06/01 13:41:17+3 -2
Added a function.
Revision 1.3fnielsen 2004/04/15 16:30:39+2 -1
Added description of field.
Revision 1.2fnielsen 2003/04/07 13:42:37+8 -5
Added brede_ext_ext2mat.
Revision 1.1fnielsen 2003/01/21 10:03:21None
Initial version.

Filename: brede_ext_ext2html.m
Revision 1.29fn 2007/01/04 23:58:18+496 -448
Extended with the output property.
Revision 1.28fn 2006/08/15 18:14:24+13 -11
Moved Wikipedia code around.
Minor additions to the help text.
Revision 1.27fnielsen 2005/03/22 12:16:49+7 -7
Bugfix: Did produce too small PNG images with a version of Matlab.
Revision 1.26fnielsen 2004/11/17 11:12:32+18 -7
Changed to handle font problem in dot.
Revision 1.25fnielsen 2004/09/22 17:01:20+31 -4
Changed info property handling.
Revision 1.24fnielsen 2004/05/11 17:50:56+11 -1
Added generation of links to wikipedia.
Revision 1.23fnielsen 2004/05/03 19:19:46+35 -13
Changed generation of Dot files.
Revision 1.22fnielsen 2004/04/18 21:01:43+6 -2
Added GENSAT and PubGene links if gene symbol is available.
Revision 1.21fnielsen 2004/04/15 16:30:25+10 -7
Added to genesymbol.
Revision 1.20fnielsen 2004/04/06 18:24:06+63 -10
Dot problem.
Revision 1.19fnielsen 2004/03/29 17:44:10+2 -2
Bugfix: dot program did not return after call.
Revision 1.18fnielsen 2004/03/22 17:15:48+47 -31
Bugfix to handle situations were the 'dot' program is not available.
Revision 1.17fnielsen 2003/07/22 19:17:09+26 -9
Bugfix: Did not work if only a subset of Ext structure were input.
Implemented VRML output.
Revision 1.16fnielsen 2003/04/25 15:24:14+26 -26
Bugfix: Did not produce correct formatting for some of the summaries.
Revision 1.15fnielsen 2003/04/11 14:22:23+4 -4
Extended to handle cellstring for DirectoryBar property.
Revision 1.14fnielsen 2003/04/10 16:39:17+3 -2
Bugfix: Did not link to all Exp structures.
Revision 1.13fnielsen 2003/04/08 23:27:04+11 -9
Bugfix in connection with generation of children experiment listings
and corner cube.
Revision 1.12fnielsen 2003/04/08 19:17:04+106 -17
Added directorybar property and roots index.
Now generates corner cube visualization for descendants.
Revision 1.11fnielsen 2003/04/07 17:18:53+26 -5
Extended to report NeuronDB identifier.
Extended to handle 'Reference' field.
Revision 1.10fnielsen 2003/03/28 20:49:55+3 -4
Now makes the figure invisible during plotting.
Revision 1.9fnielsen 2003/02/28 16:34:42+3 -3
Changed layout in HTML.
Revision 1.8fnielsen 2003/01/16 19:46:59+62 -8
Added generation of alphabetic index.
Revision 1.7fnielsen 2002/12/05 17:52:40+3 -2
Bugfix: Did not clear corner cube figure.
Revision 1.6fnielsen 2002/12/05 14:31:44+23 -4
Extended to generate corner cube environment.
Revision 1.5fnielsen 2002/12/04 23:43:36+14 -5
Extended help text.
Change titles.
Revision 1.4fnielsen 2002/11/29 09:57:12+5 -1
Added CASRN writing.
Revision 1.3fnielsen 2002/11/26 16:32:16+7 -2
Extended help example.
Revision 1.2fnielsen 2002/11/25 18:02:39+107 -26
Extended to write Experiments, references and IDs.
Revision 1.1fnielsen 2002/11/22 18:36:41None
Initial version.

Filename: brede_ext_ext2mat.m
Revision 1.1fnielsen 2002/11/22 18:36:57None
Initial version.

Filename: brede_ext_ext2str.m
Revision 1.1fnielsen 2004/06/01 13:40:30None
Initial version.

Filename: brede_ext_getfield.m
Revision 1.1fnielsen 2002/11/25 17:16:51None
Initial version.

Filename: brede_ext_woext2html.m
Revision 1.3fn 2007/07/26 15:18:16+15 -4
Some corrections/extensions to handle empty cellstrings and similar.
Revision 1.2fn 2006/09/22 16:25:39+3 -3
Minor bugfix: Missing semicolon.
Revision 1.1fnielsen 2006/03/09 17:32:28None
Initial version.

Filename: brede_hash_func.m
Revision 1.2fn 2008/03/12 12:37:22+6 -2
Adjustment in help text.
Revision 1.1fnielsen 1999/04/23 11:57:15None
Initial version

Filename: brede_hb_cityscape.m
Revision 1.3fn 2008/03/12 13:17:39+11 -11
Adjustment of help text.
Revision 1.2fnielsen 1999/01/07 16:20:07+2 -2
Help text alignment.
Revision 1.1fnielsen 1999/01/04 15:04:54None
Initial version

Filename: brede_hb_house.m
Revision 1.3fn 2008/03/12 13:16:45+2 -2
Typo.
Revision 1.2fn 2008/03/12 13:16:28+10 -8
Adjustment of help text.
Revision 1.1fnielsen 1999/01/04 15:03:38None
Initial version

Filename: brede_hb_person.m
Revision 1.3fn 2008/03/12 13:18:01+4 -3
Adjustment of help text.
Revision 1.2fnielsen 1999/02/19 18:36:01+199 -166
Implemented some properties.
Changed color.
Revision 1.1fnielsen 1999/02/19 15:49:48None
Initial version

Filename: brede_hb_torus.m
Revision 1.2fn 2008/03/12 12:47:32+4 -3
Adjustment in help text.
Revision 1.1fnielsen 1999/01/04 15:02:58None
Initial version

Filename: brede_html_close_jerne.m
Revision 1.9fn 2009/10/25 17:29:31+2 -2
Correction in width.
Revision 1.8fn 2009/10/25 17:22:10+9 -7
Change of the way table layout was generated.
Revision 1.7fn 2006/08/10 11:21:57+2 -2
Changed the footer slightly.
Revision 1.6fn 2006/07/05 14:13:58+16 -13
Changed indentation.
Revision 1.5fnielsen 2003/04/11 14:06:07+21 -9
Extended to handle cellstring for DirectoryBar property
Revision 1.4fnielsen 2003/04/10 13:03:07+10 -4
Extended to report the calling function.
Revision 1.3fnielsen 2003/03/14 09:17:54+5 -5
Adjusted the help text.
Revision 1.2fnielsen 2002/02/08 16:48:00+6 -2
Added time to the date string.
Made the font to size 1.
Revision 1.1fnielsen 2002/02/05 18:37:12None
Initial version.

Filename: brede_html_list.m
Revision 1.6fnielsen 2004/05/04 22:46:35+87 -21
Extended with header and output property.
Revision 1.5fnielsen 2004/02/19 16:02:20+3 -3
Now centered and with border.
Revision 1.4fnielsen 2004/02/10 18:44:03+8 -3
Added ability to write 'loc' structures
Now writes integers instead of float if the number is integer.
Revision 1.3fnielsen 2003/04/11 14:03:00+5 -4
Added directorybar property.
Revision 1.2fnielsen 2003/04/04 10:02:57+51 -5
Extended with properties: filename, directorybar and title.
Revision 1.1fnielsen 2003/04/04 00:57:03None
Initial version.

Filename: brede_html_loc.m
Revision 1.7fnielsen 2004/08/26 16:02:47+3 -2
Minor bugfix in property reading.
Revision 1.6fnielsen 2004/02/23 13:31:17+5 -3
Included a note to brede_loc_loc2html.
Revision 1.5fnielsen 2004/02/19 16:01:45+13 -7
Implemented INDEX field.
Revision 1.4fnielsen 2002/06/27 22:41:13+98 -16
Extended to write BrainMap identifiers.
Revision 1.3fnielsen 2002/01/14 18:10:34+8 -7
HTML bugfix: added td and tr end markup.
Revision 1.2fnielsen 2000/07/28 19:32:04+13 -32
Implemented the parsing of properties.
Revision 1.1fnielsen 2000/07/26 17:36:08None
Initial version

Filename: brede_html_open_jerne.m
Revision 1.15fn 2009/10/25 17:21:21+4 -4
Correction of HTML validation problem.
Revision 1.14fn 2009/10/25 17:08:40+22 -18
Changed table generation, css, server name.
Revision 1.13fn 2009/10/25 14:14:10+8 -2
Added Style.
Revision 1.12fn 2007/06/07 19:51:44+2 -2
Bugfix in connection with opening of file for writing.
Revision 1.11fn 2006/07/05 14:16:29+4 -4
Bugfix in setting of encoding.
Revision 1.10fn 2006/07/04 10:42:36+2 -2
Bugfix: Did not write encoding correctly.
Revision 1.9fn 2006/06/23 11:38:49+56 -45
Changes in the HTML code. Now writes that the UTF-8 encoding is used.
Revision 1.8fnielsen 2005/10/19 12:17:40+4 -2
Minor extension: Now able to handle empty argument in 'directoryBar' property.
Revision 1.7fnielsen 2004/10/12 21:53:39+4 -2
Changed default directory bar.
Revision 1.6fnielsen 2004/09/15 12:05:52+8 -2
Changed the default directorybar.
Revision 1.5fnielsen 2004/03/22 13:45:36+3 -3
Added a bit more information to an error message.
Revision 1.4fnielsen 2004/02/24 19:53:12+4 -2
Changed to link to glassory.
Revision 1.3fnielsen 2004/01/29 17:48:03+98 -2
Implemented some of the link rel fields.
Revision 1.2fnielsen 2003/04/11 14:05:34+31 -28
Extended to handle cellstring for DirectoryBar property.
Revision 1.1fnielsen 2002/02/05 18:35:21None
Initial version.

Filename: brede_html_relvol.m
Revision 1.8fnielsen 2002/08/16 12:58:02+6 -4
Now generating cornercube a returning the similiarity measure.
Revision 1.7fnielsen 2002/02/06 09:34:47+3 -3
Enabled generation of cornercubes.
Revision 1.6fnielsen 2002/01/14 18:09:44+41 -14
Extended to write out locations.
Extended to write the experiment description.
Revision 1.5fnielsen 2002/01/08 20:58:58+93 -69
Updated to handle more heterogeneous data.
Revision 1.4fnielsen 2002/01/03 20:37:44+2 -2
Bugfix: nonvalide HTML was generated.
Revision 1.3fnielsen 2002/01/03 20:32:37+2 -2
Bugfix: did generate jpeg instead of PNG.
Revision 1.2fnielsen 2002/01/03 17:43:15+78 -11
Extended to generate cornercubes for each experiment.
Revision 1.1fnielsen 2002/01/02 19:40:43None
Initial version.

Filename: brede_html_vol2html.m
Revision 1.4fnielsen 2002/05/14 20:31:29+94 -73
Extended with linking to VRML files
and using the filename field of the volume structure.
Revision 1.3fnielsen 2002/02/05 18:37:32+25 -71
Updated to construct an index file.
Revision 1.2fnielsen 2002/02/01 01:19:01+51 -5
Extended with generation of alphabetic index.
Revision 1.1fnielsen 2002/01/03 21:54:00None
Initial version.

Filename: brede_ica_bs_est.m
Revision 1.9fnielsen 2004/09/22 15:37:58+11 -3
Extended to handle string as input to the 'info' property.
Revision 1.8fnielsen 2004/09/21 19:04:45+13 -3
Added info property.
Revision 1.7fnielsen 2003/03/17 16:09:22+9 -1
Bugfix: Didnot work for a zero matrix.
Revision 1.6fnielsen 2003/03/05 20:15:24+12 -2
Changed to control the skewness of the sources by permuting the sign
between sources and mixing.
Revision 1.5fnielsen 2003/02/27 15:05:03+2 -2
Minor bugfix: missing semicolon.
Revision 1.4fnielsen 2003/02/26 19:11:56+52 -10
Extended with Winit property.
Revision 1.3fnielsen 2002/10/29 11:55:48+7 -1
Added reference to Kolenda toolbox.
Revision 1.2fnielsen 2002/10/18 16:08:10+52 -32
Changed to transposed version.
Revision 1.1fnielsen 2002/10/17 22:24:46None
Draft version.

Filename: brede_ica_est.m
Revision 1.5fnielsen 2004/09/22 15:40:12+2 -1
Bugfix: Did not read the info property correctly.
Revision 1.4fnielsen 2004/09/21 19:03:55+13 -3
Added info.
Revision 1.3fnielsen 2003/02/26 19:10:34+62 -12
Extended with winit property.
Changed to call brede_ica_nbs_est.
Revision 1.2fnielsen 2002/10/31 11:37:21+5 -3
Bugfix.
Revision 1.1fnielsen 2002/10/31 11:35:31None
Updated to initial working version.

Filename: brede_ica_nbs_est.m
Revision 1.5fnielsen 2004/09/22 15:04:53+3 -2
Enabled to handle string as input for the 'info' property.
Revision 1.4fnielsen 2004/09/21 19:04:30+11 -2
Added info property.
Revision 1.3fnielsen 2003/11/28 15:49:13+2 -3
Corrected function names in 'see also' part of help text.
Revision 1.2fnielsen 2003/02/26 19:14:36+27 -8
Extended with Winit property.
Revision 1.1fnielsen 2003/02/20 19:52:52None
Initial version.

Filename: brede_idf_chi2.m
Revision 1.2fnielsen 2002/02/06 13:47:25+2 -2
Changed to called brede version of cdf_chi2.
Revision 1.1fnielsen 2001/05/12 14:24:58None
Initial version.

Filename: brede_idf_gauss.m
Revision 1.2fnielsen 2006/02/14 15:16:59+10 -2
Correction in function synopsis.
Revision 1.1fnielsen 2004/08/26 15:44:32None
Initial version.

Filename: brede_jou_wojou2bib.m
Revision 1.1fnielsen 2005/06/09 17:18:33None
Initial version.

Filename: brede_loc.m
Revision 1.21fn 2007/06/15 17:12:43+6 -2
Added functions.
Revision 1.20fn 2007/06/12 22:05:21+7 -6
Added brede_loc_loc2coord.
Revision 1.19fnielsen 2005/10/19 13:30:34+3 -2
Added function.
Revision 1.18fnielsen 2005/03/11 00:45:43+6 -5
Added function.
Revision 1.17fnielsen 2005/03/11 00:10:01+5 -2
Added functions.
Revision 1.16fnielsen 2005/02/24 14:42:54+24 -3
Added functions and extended description text.
Revision 1.15fnielsen 2005/02/15 21:10:26+3 -2
Added brede_loc_label.
Revision 1.14fnielsen 2004/10/01 10:07:22+7 -4
Added brede_read_csv2loc.
Revision 1.13fnielsen 2004/05/18 15:32:12+8 -4
Added a function and a field description.
Revision 1.12fnielsen 2004/05/18 08:27:08+3 -1
Added fields valueMin, valueMax.
Revision 1.11fnielsen 2004/03/25 18:25:34+11 -7
More descriptions: value, valueStd and valueCov.
Revision 1.10fnielsen 2003/11/06 17:00:56+7 -5
Added brede_loc_dist_hausdorff.
Revision 1.9fnielsen 2003/01/13 18:27:02+5 -1
Added brede_loc_query.
Revision 1.8fnielsen 2002/12/04 21:06:23+5 -4
Added a function.
Revision 1.7fnielsen 2002/11/13 18:27:43+18 -1
Added brede_loc_select and brede_ta3_loc.
Revision 1.6fnielsen 2002/11/12 18:27:43+4 -1
Added brede_bib_bib2loc and percentChange.
Revision 1.5fnielsen 2002/11/08 09:07:16+12 -1
Added new fields.
Revision 1.4fnielsen 2002/09/12 08:06:28+2 -2
Corrected a spelling mistake.
Revision 1.3fnielsen 2002/08/12 11:27:40+33 -23
Added more description.
Revision 1.2fnielsen 2002/07/28 21:39:23+8 -2
Extended.
Revision 1.1fnielsen 2002/05/23 22:45:16None
Initial version.

Filename: brede_loc_asymmetry.m
Revision 1.6fnielsen 2005/03/21 16:44:57+5 -5
Bugfix: Was using the Lyngby version of the CDF for the binomial distribution.
Revision 1.5fnielsen 2004/05/03 13:31:09+3 -3
Bugfix: Did not work for structure input.
Revision 1.4fnielsen 2004/04/02 16:37:20+34 -18
Extended to handle loc structures that does not have a 'coord' field.
Revision 1.3fnielsen 2002/09/18 17:31:14+9 -4
Enabled to handle matrix input.
Revision 1.2fnielsen 2002/09/18 15:21:03+25 -19
Now returning zero is L is empty.
Revision 1.1fnielsen 2002/05/23 15:44:26None
Initial version.

Filename: brede_loc_coord2url.m
Revision 1.2fn 2009/09/24 15:13:09+2 -2
Updated URL.
Revision 1.1fnielsen 2005/10/19 13:29:56None
Initial version.

Filename: brede_loc_dist_hausdorff.m
Revision 1.1fnielsen 2003/11/06 16:59:42None
Initial version.

Filename: brede_loc_dist_minmin.m
Revision 1.1fnielsen 2004/01/15 15:27:54None
Initial version.

Filename: brede_loc_hulllevel.m
Revision 1.1fnielsen 2004/11/25 23:51:49None
Initial version.

Filename: brede_loc_label.m
Revision 1.6fn 2009/09/25 09:30:46+2 -1
Now returns with the 'woroi' field set.
Revision 1.5fn 2009/09/24 15:44:54+7 -4
Added support for AAL volume lying in the present working directory.
Revision 1.4fn 2009/08/17 13:08:13+33 -13
Extended to be able to do the AAL labeling based on a volume from the
'labeledvolume' property.
Revision 1.3fn 2007/06/15 17:19:17+5 -3
Bugfix in connection with AAL atlas and voxels outside labeled regions.
Revision 1.2fn 2007/06/13 16:45:09+58 -5
Extended with the 'type' property.
Revision 1.1fnielsen 2005/02/24 14:42:37None
Initial version.

Filename: brede_loc_loc2coord.m
Revision 1.2fnielsen 2005/10/19 13:07:49+9 -4
Bugfix: Could not handle empty input.
Revision 1.1fnielsen 2004/02/23 12:55:30None
Initial version.

Filename: brede_loc_loc2exp.m
Revision 1.3fnielsen 2002/11/14 16:58:20+11 -5
Bugfix: 'where' with functionalArea did not work.
Revision 1.2fnielsen 2002/11/14 14:00:06+60 -11
Added GroupBy property.
Revision 1.1fnielsen 2002/11/13 18:23:16None
Initial version: Presently only working with Brodmann areas.

Filename: brede_loc_loc2html.m
Revision 1.19fn 2009/10/25 17:21:34+61 -61
Correction of HTML validation problem.
Revision 1.18fn 2009/09/25 14:17:41+32 -26
Added and change table header.
Revision 1.17fn 2009/09/24 16:10:57+23 -5
Implemented 'caption' property.
Bugfix on 'description' field.
Revision 1.16fnielsen 2005/10/19 13:29:44+29 -11
Now set to generate URLs for coordinates.
Revision 1.15fnielsen 2005/05/30 11:35:10+16 -12
Added brodmann as possible field.
Revision 1.14fnielsen 2005/04/08 10:46:17+14 -3
Added a 'title' property.
directoryBar now sat from brede_html_open_jerne.
Revision 1.13fnielsen 2004/09/15 17:02:18+3 -3
Bugfix in connection with empty woroi fields.
Revision 1.12fnielsen 2004/08/05 17:18:48+18 -1
Extended to handle xReported, yReported and zReported.
Revision 1.11fnielsen 2004/05/18 17:12:55+25 -6
Extended to report more fields.
Revision 1.10fnielsen 2004/04/27 13:29:57+7 -3
Minor bugfix/change: Did not make a nbsp for a cell string with an
empty string.
Revision 1.9fnielsen 2004/04/14 19:18:28+2 -2
Correction: Did not escape \n.
Revision 1.8fnielsen 2004/02/23 15:43:23+82 -63
Implemented the possibility of showing multiple WOBIB identifiers
Implemented 'Bib' and 'Exp' field possibility.
Revision 1.7fnielsen 2004/02/10 22:43:20+39 -19
Bugfix: Did not read the properties correctly.
Extended with the INDEX field.
Extended to show an type of field.
Included an example in the help text.
Revision 1.6fnielsen 2002/11/20 17:58:50+9 -3
Extended to write functionalArea field.
Revision 1.5fnielsen 2002/11/18 17:50:46+33 -19
Added MaxLocations property
Bugfix with file property.
Revision 1.4fnielsen 2002/11/13 18:22:14+274 -74
Extended to handle user defined fields.
Revision 1.3fnielsen 2002/09/02 12:16:04+6 -4
Small bugfix: semicolon missing, able to handle empty structures.
Revision 1.2fnielsen 2002/08/27 18:54:31+37 -9
Bugfix/extention to handle cell arrays.
Revision 1.1fnielsen 2002/05/23 22:38:26None
Initial draft.

Filename: brede_loc_loc2html_stat.m
Revision 1.6fnielsen 2005/03/22 11:44:31+3 -8
Change/bugfix: Produced too small sized PNG images.
Revision 1.5fnielsen 2003/05/12 09:40:41+7 -2
Made figure invisible.
Revision 1.4fnielsen 2003/04/11 14:02:33+19 -5
Added DirectoryBar property.
Revision 1.3fnielsen 2003/03/11 19:42:23+2 -2
Bugfix: Corrected precentChange to percentChange.
Revision 1.2fnielsen 2003/03/06 19:26:18+27 -1
Extended to produce PNG file with histograms of several field values.
Revision 1.1fnielsen 2002/12/04 20:59:28None
Initial version.

Filename: brede_loc_loc2loc.m
Revision 1.10fn 2009/04/30 16:01:22+2 -2
Bugfix: Did not work with certain types of multiple coordinates.
Revision 1.9fn 2008/10/07 17:50:30+4 -4
Bugfix: Did not work for certain input types.
Revision 1.8fn 2008/10/07 17:37:24+11 -2
Enabled to handle numeric input.
Revision 1.7fn 2008/04/01 16:50:50+55 -43
Now sets the 'coord' from 'x' 'y' and 'z' if the 'coord' field is not available.
Revision 1.6fnielsen 2005/01/28 16:17:09+21 -20
Bugfix: Still did work for empty input arguments.
Revision 1.5fnielsen 2005/01/28 11:37:45+7 -2
Bugfix: Did not work for empty structures.
Revision 1.4fnielsen 2005/01/27 19:42:37+11 -5
Changed to set the x, y and z fields from the coord field.
Revision 1.3fnielsen 2002/08/27 18:47:57+20 -2
Added conversion of the 'coord' field.
Revision 1.2fnielsen 2002/05/26 18:15:57+3 -3
Now returns the location structure as a column vector.
Revision 1.1fnielsen 2002/05/23 14:14:19None
Initial version.

Filename: brede_loc_loc2mat.m
Revision 1.11fn 2008/04/01 16:49:15+30 -33
Extended to be able to return coord from 'x', 'y' and 'z' fields.
Revision 1.10fn 2008/04/01 16:08:19+221 -193
Implemented the ability to use x, y and z fields, instead of just the
'coord' field.
Code indentation.
Revision 1.9fn 2006/11/09 19:40:14+21 -19
Now write NaN if coord if not defined.
Revision 1.8fn 2006/08/17 12:30:53+8 -6
Extended to handle 'waitbar' as input for the 'info' property.
Revision 1.7fnielsen 2006/02/14 18:05:45+37 -30
Changed to use brede_bdb for loading the Brede Database
Changed to return all columns for a (loc x roi) matrix.
Revision 1.6fnielsen 2005/03/17 14:59:10+2 -2
Bugfix: Did not always read the database file.
Revision 1.5fnielsen 2005/03/17 12:51:59+97 -10
Extended with the 'woroi' type, and with 'info' and 'roi' properties.
Revision 1.4fnielsen 2005/02/24 14:45:25+57 -8
Extended with the 'VolumeLabels' type.
Revision 1.3fnielsen 2004/02/10 23:03:03+18 -6
Extended to handle FunctionalArea type property.
Revision 1.2fnielsen 2004/01/30 17:11:45+44 -8
Implemented the lobar anatomy type.
Revision 1.1fnielsen 2003/08/13 18:10:07None
Initial version.

Filename: brede_loc_loc2tex.m
Revision 1.7fn 2009/08/07 14:26:42+26 -4
Implemented more fields.
Corrected an error in the pValueCorrected field
Revision 1.6fn 2008/05/21 13:13:37+13 -3
Added 'numberOfVoxels' for possible field.
Revision 1.5fn 2008/05/16 13:35:18+23 -2
Added handling of pValue and pValueCorrected.
Revision 1.4fn 2008/05/16 13:11:42+106 -106
Code indentation.
Revision 1.3fn 2006/07/19 17:49:34+15 -2
Added the LatexTableType property.
Revision 1.2fn 2006/06/26 18:25:05+108 -14
Implemented the 'caption' and 'fields' fields.
Revision 1.1fnielsen 2004/12/08 22:21:30None
Initial version.

Filename: brede_loc_loc2vol.m
Revision 1.6fn 2008/10/07 17:51:15+12 -11
Added ch2 template option.
Revision 1.5fn 2008/03/12 14:51:23+4 -4
Bugfix for octave in conditionals.
Revision 1.4fnielsen 2005/06/10 18:01:46+10 -7
Extended with a new template.
Revision 1.3fnielsen 2004/05/29 23:07:38+10 -7
Bugfix: did not work for structure with coord field as cellstring.
Revision 1.2fnielsen 2004/05/18 17:12:20+3 -3
Disable a warning message.
Revision 1.1fnielsen 2004/05/18 15:09:10None
Renamed from brede_loc_vol.

Filename: brede_loc_loc2wptemplate.m
Revision 1.2fn 2008/03/31 14:14:19+12 -7
Bugfix: Did not work for x coordinate.
Now does not write empty fields.
Revision 1.1fn 2008/03/31 00:08:55None
Initial version.

Filename: brede_loc_mat2loc.m
Revision 1.6fnielsen 2002/09/02 12:02:51+2 -2
Bugfix.
Revision 1.5fnielsen 2002/09/02 12:01:47+3 -3
Added 'type' to loc structure.
Revision 1.4fnielsen 2002/05/14 20:32:02+71 -8
Added filename and brainmap identifier.
Revision 1.3fnielsen 2001/11/08 13:45:31+51 -7
Implemented description field.
Revision 1.2fnielsen 2001/05/21 14:26:10+3 -3
Updated the see also list.
Revision 1.1fnielsen 2000/09/01 13:56:04None
Initial version.

Filename: brede_loc_mean.m
Revision 1.3fnielsen 2005/11/09 09:41:23+11 -1
Enabled to handle empty first input argument.
Revision 1.2fnielsen 2005/03/11 00:12:59+3 -2
Added a function to 'see also'.
Revision 1.1fnielsen 2004/11/24 20:08:24None
Initial version.

Filename: brede_loc_median.m
Revision 1.2fnielsen 2005/03/11 00:09:47+9 -2
Added functions to 'see also'
Revision 1.1fnielsen 2004/11/25 23:51:14None
Initial version.

Filename: brede_loc_nearestloc.m
Revision 1.4fnielsen 2004/02/23 15:46:13+20 -14
Change: Now returning argument as cell array.
Extended to handle cell as input.
Help example changed to use brede_loc_loc2html.
Revision 1.3fnielsen 2002/06/28 08:41:53+2 -1
Added returning of 'exp' structure.
Revision 1.2fnielsen 2002/06/27 19:13:45+75 -1
Implemented the function.
Revision 1.1fnielsen 2002/06/25 21:22:01None
Framework version.

Filename: brede_loc_query.m
Revision 1.13fn 2006/08/17 12:11:21+8 -2
Extended to handle string and cellstring as input for WOROI type.
Revision 1.12fn 2006/03/22 17:13:12+16 -9
Change format of debug messages.
Added a bit to the help text.
Revision 1.11fnielsen 2006/03/06 15:33:43+31 -13
Bugfix/extension: Did not query on functional areas the correct way.
Revision 1.10fnielsen 2006/02/21 17:56:57+11 -3
Bugfix: Did not work if the query was for a Brodmann area that
contained other Brodmann areas.
Revision 1.9fnielsen 2005/12/05 11:49:59+21 -36
Changed to use brede_bdb instead of persistent variables.
Revision 1.8fnielsen 2005/11/09 15:16:48+91 -31
Bugfix/Change to work with queries on Brodmann areas
Changed the use persistent variable through the brede_bdb function.
Revision 1.7fnielsen 2005/03/11 16:14:01+65 -26
Extended with new types.
Revision 1.6fnielsen 2004/11/19 15:48:56+125 -23
Extended with 'type' property.
Revision 1.5fnielsen 2003/01/15 02:35:01+2 -2
Bugfix: did not work if LOC was a structure.
Revision 1.4fnielsen 2003/01/13 18:26:10+19 -10
Now returning sorted distances.
Now resetting the LOC variable when new Bib structure is used as input
arguments.
Revision 1.3fnielsen 2002/11/20 19:10:22+112 -25
Proper initial version.
Revision 1.2fnielsen 2002/11/15 18:36:53+24 -5
Draft version.
Revision 1.1fnielsen 2002/11/15 04:22:09None
A possible draft version.

Filename: brede_loc_select.m
Revision 1.9fnielsen 2004/04/01 15:55:45+7 -234
Initial version.
Revision 1.8fnielsen 2003/08/14 15:20:14+49 -35
Implementation of some numerical comparison for the where command.
Revision 1.7fnielsen 2003/04/26 01:51:22+12 -5
Extended to return INDEX with select command.
Revision 1.6fnielsen 2003/03/26 23:55:37+6 -3
Included a check when reading the properties.
Revision 1.5fnielsen 2003/03/06 19:25:35+32 -31
Extended to return whatever field with the 'select' property.
Revision 1.4fnielsen 2003/01/28 18:19:29+32 -5
Extended with findstri and strmatchi.
Revision 1.3fnielsen 2003/01/15 15:52:40+36 -17
Implemented findstr and strmatch.
Revision 1.2fnielsen 2002/11/14 13:43:01+44 -17
Extended with lobarAnatomy and functionalArea select and where command.
Revision 1.1fnielsen 2002/11/13 18:27:20None
Initial version.

Filename: brede_loc_symmetrize.m
Revision 1.2fnielsen 2002/05/23 18:56:27+4 -3
Missing semicolon.
Revision 1.1fnielsen 2002/05/23 14:28:14None
Initial version.

Filename: brede_loc_test_equal.m
Revision 1.10fnielsen 2005/06/04 01:23:24+12 -6
Now uses the brede_cdf_rank function in permutation testing.
Revision 1.9fnielsen 2005/03/14 21:25:54+55 -4
Added the 'PeelingPermutation' type.
Revision 1.8fnielsen 2004/11/25 23:50:59+24 -23
Extended to handle multidimensional tests for the medianpermutation type.
Revision 1.7fnielsen 2004/11/17 18:11:32+24 -4
Implemented meanscovarschi2.
Revision 1.6fnielsen 2003/09/05 17:48:49+54 -2
Added medianpermutation.
Revision 1.5fnielsen 2003/09/04 15:28:05+48 -4
Added the EuclideanPermutation type.
Revision 1.4fnielsen 2003/08/14 15:15:11+42 -13
Changed to return the p-value.
Revision 1.3fnielsen 2003/08/13 18:46:51+97 -15
Added mahalanobispermutation.
Revision 1.2fnielsen 2003/05/14 17:40:21+134 -27
Initial version.
Revision 1.1fnielsen 2002/07/28 21:46:12None
Draft backup version.

Filename: brede_loc_test_gaussian.m
Revision 1.1fnielsen 2003/08/14 14:49:01None
Initial version.

Filename: brede_loc_vol.m
Revision 1.21fnielsen 2004/05/18 15:31:35+5 -337
Obsolete: renamed to brede_loc_loc2vol.
Revision 1.20fnielsen 2004/02/10 23:04:03+2 -2
Made an error message more informative.
Revision 1.19fnielsen 2003/06/06 15:36:39+7 -8
Changed CVS behavior.
Revision 1.18fnielsen 2003/04/03 17:19:04+3 -2
Changed so the description field was set with more descriptive information.
Revision 1.17fnielsen 2003/01/15 15:29:13+4 -4
Bugfix: Did not work with 'sigma' set to 'loocv'.
Revision 1.16fnielsen 2002/11/13 18:24:50+23 -9
Added description property.
Revision 1.15fnielsen 2002/09/05 13:48:23+8 -24
Added an extra template.
Revision 1.14fnielsen 2002/09/02 12:20:38+50 -7
Bugfix: Wrong handling of input sigma.
Enabled to handle empty 'loc'
Enabled to handle cell arrays.
Revision 1.13fnielsen 2002/08/16 12:28:29+8 -6
Added extra template.
Revision 1.12fnielsen 2002/06/27 19:06:19+26 -23
Extended the normalization property with SumOne.
Revision 1.11fnielsen 2002/06/25 21:22:16+52 -4
Extended with signtype.
Revision 1.10fnielsen 2002/05/26 18:28:18+78 -24
Implemented LOO cross-validation setup of sigma.
Change name of template.
Revision 1.9fnielsen 2002/05/14 20:36:37+5 -16
Now copying the filename field from the location structure to the
volume structure if that is available.
Revision 1.8fnielsen 2002/05/14 16:35:05+4 -3
Now copying returning the input location structure as a field in the output.
Revision 1.7fnielsen 2002/02/06 13:42:39+26 -3
Bugfix: Did not work if magnitude field didn't exist.
Revision 1.6fnielsen 2002/01/14 18:08:11+2 -2
Erased laplace from a property list since it was not implemented.
Revision 1.5fnielsen 2002/01/14 09:05:00+40 -39
Rearranged code
Added support for locations with negative magnitude.
Revision 1.4fnielsen 2001/11/08 13:24:08+3 -2
Updated the 'See also' field.
Revision 1.3fnielsen 2001/04/28 17:46:46+60 -16
Changed sampling of volume and kernel width.
Revision 1.2fnielsen 2000/10/23 14:46:46+63 -27
Implemented some of the kernels.
Not tested yet!
Revision 1.1fnielsen 2000/07/28 19:26:38None
"Holiday" checkin - not finished.

Filename: brede_loc_xform.m
Revision 1.13fn 2009/02/12 11:49:43+12 -1
Changed functional interface: Now sets the x, y and z in the output.
Revision 1.12fn 2008/06/06 17:05:49+68 -6
Implemented the MTT transformations.
Revision 1.11fn 2008/06/06 15:54:28+45 -27
Internal code changes.
Revision 1.10fn 2008/06/06 13:42:41+165 -165
Code indentation.
Revision 1.9fnielsen 2004/08/05 17:14:24+21 -3
Enabled to handle input locations structures as cell arrays.
Revision 1.8fnielsen 2003/08/06 10:48:46+13 -1
Added a note on the PAN transformations.
Revision 1.7fnielsen 2003/07/23 20:28:39+9 -7
Implemented the mni2tal and tal2mni property.
Revision 1.6fnielsen 2003/03/10 18:16:36+48 -9
Adde the PANa transformations.
Revision 1.5fnielsen 2002/08/03 18:53:00+58 -28
Implemented input and output of matrix.
Revision 1.4fnielsen 2000/10/20 09:13:39+19 -5
Bugfix: Did not work if the location structure contained more than one coordinate.
Revision 1.3fnielsen 2000/10/18 16:26:37+31 -10
Implemented InvBrett.
Revision 1.2fnielsen 2000/08/16 14:48:30+9 -8
Bugfix.
Revision 1.1fnielsen 2000/08/16 14:01:15None
Initial version.

Filename: brede_make.m
Revision 1.2fnielsen 2004/02/16 14:16:10+3 -2
Added compiling of an other function.
Revision 1.1fnielsen 2003/11/14 17:24:35None
Initial version.

Filename: brede_mat.m
Revision 1.33fn 2008/08/21 14:51:31+12 -10
Added Khatri-Rao product
Revision 1.32fn 2008/06/05 09:54:25+4 -3
Added brede_mat_knn.
Revision 1.31fn 2008/04/15 15:59:29+4 -2
Added brede_mat_nls_est.
Revision 1.30fn 2008/02/14 00:27:46+6 -2
Added brede_mat_glm_* functions.
Revision 1.29fn 2008/02/12 09:29:12+4 -3
Added brede_mat_submatrix.
Revision 1.28fn 2007/10/24 13:37:15+8 -4
Added brede_mat_loganplot and brede_write_mat2csv.
Revision 1.27fn 2007/10/23 16:07:54+2 -2
Slight change in description of brede_mat_match.
Revision 1.26fn 2007/03/26 17:19:09+2 -2
typo.
Revision 1.25fn 2007/01/09 12:33:40+4 -2
Added brede_mat_cat_columns.
Revision 1.24fnielsen 2006/01/26 19:35:56+4 -3
Added brede_mat_inv.
Revision 1.23fnielsen 2005/11/10 13:45:24+7 -4
Added functions.
Revision 1.22fnielsen 2005/10/20 19:18:56+4 -3
Added brede_mat_divide.
Revision 1.21fnielsen 2005/08/16 16:46:13+5 -3
Added a function.
Revision 1.20fnielsen 2005/07/13 15:34:54+4 -3
Added brede_mat_sort.
Revision 1.19fnielsen 2005/07/04 16:01:35+36 -4
Turned into a function: Mostly calls brede_ui_main for the
construction of a graphical user interface.
Revision 1.18fnielsen 2005/05/31 15:15:11+5 -3
Added brede_mat_minus.
Revision 1.17fnielsen 2005/05/18 17:17:38+3 -1
Added function.
Revision 1.16fnielsen 2005/04/08 21:02:33+3 -1
Added functions.
Revision 1.15fnielsen 2005/04/05 17:09:43+6 -4
Added brede_mat_cca.
Revision 1.14fnielsen 2005/02/24 14:34:52+6 -4
Added and corrected entries.
Revision 1.13fnielsen 2005/01/11 17:33:43+5 -2
Added functions.
Revision 1.12fnielsen 2004/11/11 22:28:56+24 -9
Added functions.
Revision 1.11fnielsen 2004/09/09 16:36:13+11 -4
Added functions.
Revision 1.10fnielsen 2003/08/05 09:00:38+5 -3
Added brede_mat_descendants.
Revision 1.9fnielsen 2003/04/04 00:59:11+2 -1
Added brede_mat_novelty.
Revision 1.8fnielsen 2003/03/14 15:39:35+20 -7
Added several functions.
Revision 1.7fnielsen 2002/11/11 16:46:21+2 -1
Added brede_mat_elimzero.
Revision 1.6fnielsen 2002/09/12 10:10:59+5 -1
Added brede_read_txtmatrix.
Revision 1.5fnielsen 2002/08/22 12:50:31+30 -15
Extended help text.
Revision 1.4fnielsen 2002/02/13 16:06:17+4 -10
Added brede_mat_plot_bullseye.
Revision 1.3fnielsen 2002/01/08 21:00:31+4 -2
Added brede_mat_cat.
Revision 1.2fnielsen 2001/07/11 21:14:47+23 -10
Added some more information.
Revision 1.1fnielsen 2001/07/02 22:28:07None
Initial version.

Filename: brede_mat_2mat2html.m
Revision 1.31fn 2008/03/19 15:23:37+3 -3
Bugfix: Did not work for sparse matrices.
Revision 1.30fn 2008/02/28 23:01:14+17 -14
Changes for combatibility with Octave.
Revision 1.29fn 2007/01/04 23:57:48+3 -1
Extended to handle ext structures.
Revision 1.28fnielsen 2005/07/14 17:27:52+14 -5
Changed to handle matrix with voxelized data that did not contain the
whole volume.
Revision 1.27fnielsen 2005/04/07 16:21:32+20 -6
Implemented the maxitems property.
Revision 1.26fnielsen 2004/10/12 21:54:06+6 -6
Now uses brede_struct_guesstype to guess type of structure.
Revision 1.25fnielsen 2004/09/22 14:47:25+4 -2
Center the image.
Revision 1.24fnielsen 2004/09/21 18:37:44+23 -16
Added a detection of assignment matrix for the rendering of cornercubes.
Revision 1.23fnielsen 2004/09/16 15:18:51+25 -7
Implemented the 'info' property.
Revision 1.22fnielsen 2004/09/15 17:03:36+5 -3
Changed the width of the columns with the colgroup HTML tag.
Revision 1.21fnielsen 2004/09/15 14:38:09+3 -3
Changed default directory bar.
Revision 1.20fnielsen 2004/09/08 19:54:20+4 -1
Extended to handle 'roi' structures.
Revision 1.19fnielsen 2004/02/03 09:53:04+4 -4
Bugfix: Did not construct the extension correctly.
Revision 1.18fnielsen 2004/01/29 17:50:56+36 -12
Changed the cornercube construction to only render the uppertail if
all voxel in the volume in the 'mat' structure are positive.
Revision 1.17fnielsen 2004/01/29 14:55:38+2 -2
Bugfix: Did not work with short filenames.
Revision 1.16fnielsen 2004/01/22 19:21:45+22 -9
Some extension to cover different voxelizations.
Revision 1.15fnielsen 2003/05/23 17:17:09+20 -5
Partial extension to handle voxel coordinates that are represented as
cells (only implmented for the right panels.
Revision 1.14fnielsen 2003/04/11 14:03:21+5 -5
Extended to handle directorybar as cellstring.
Revision 1.13fnielsen 2003/04/07 13:55:32+2 -2
Changed the number of generated items on the left column.
Revision 1.12fnielsen 2003/04/03 17:24:57+20 -7
Bugfix: Did not construct filename for PNG file correctly
Extended with directoryBar property.
Revision 1.11fnielsen 2003/04/02 16:39:47+16 -3
Now also reporting the skewness.
Revision 1.10fnielsen 2003/03/28 20:48:21+106 -49
Extended to construct corner cubes.
Revision 1.9fnielsen 2003/03/14 15:38:38+4 -2
Extended to write out 'exp' structure.
Revision 1.8fnielsen 2003/03/14 09:22:42+24 -13
Now produces a table with summaries of winners.
Now display 20 items for the right matrix.
Revision 1.7fnielsen 2003/03/12 17:43:33+3 -3
Added some newlines to the HTML output.
Revision 1.6fnielsen 2003/03/07 20:02:58+21 -7
Extended to write out a star when an item is a winner in a winner
takes all.
Revision 1.5fnielsen 2003/03/07 01:54:33+6 -2
Now able to understand 'web' structures'.
Revision 1.4fnielsen 2003/02/26 19:12:59+11 -3
Extended/Bugfix: Now able to handle case where M1 has no row fields
and M2 no columns field.
Revision 1.3fnielsen 2003/02/12 19:16:41+13 -11
Added description of properties to help text.
Changed default file name.
Revision 1.2fnielsen 2003/02/05 20:52:58+15 -3
Added the title property.
Revision 1.1fnielsen 2003/02/05 18:47:37None
Initial version.

Filename: brede_mat_abs.m
Revision 1.2fnielsen 2004/09/09 15:40:49+7 -1
Added setting of the description field.
Revision 1.1fnielsen 2004/09/09 15:35:59None
Initial version.

Filename: brede_mat_add.m
Revision 1.5fnielsen 2005/05/31 15:15:27+6 -5
Correction of the help text.
Revision 1.4fnielsen 2005/01/11 20:33:20+2 -2
Correct erroneous help text.
Revision 1.3fnielsen 2003/02/07 17:36:16+6 -5
Bugfix: Did not copy all fields.
Revision 1.2fnielsen 2001/07/13 21:34:39+2 -2
Bugfix in connection with column concatenation.
Revision 1.1fnielsen 2001/07/13 19:57:51None
Initial version.

Filename: brede_mat_ascendants.m
Revision 1.1fnielsen 2005/01/11 17:30:15None
Initial version.

Filename: brede_mat_assignment.m
Revision 1.6fn 2006/07/21 11:18:32+48 -14
Implemented the 'output' property.
Revision 1.5fn 2006/07/20 14:33:24+26 -4
Implemented the 'output' property.
Revision 1.4fn 2006/07/14 21:45:57+28 -12
Added to the help text.
Revision 1.3fn 2006/07/14 21:31:22+160 -9
Implemented MaxMunkres.
Revision 1.2fn 2006/07/12 17:47:20+28 -6
Implemented OptimizationType property.
Revision 1.1fn 2006/06/29 23:38:47None
Initial version.

Filename: brede_mat_binarize.m
Revision 1.3fnielsen 2004/11/17 15:38:15+3 -2
Bugfix: Did not work in new version of Matlab.
Revision 1.2fnielsen 2003/02/26 19:09:01+4 -3
Bugfix: Wrong setup of description field.
Revision 1.1fnielsen 2003/02/26 18:50:28None
Initial version.

Filename: brede_mat_cat.m
Revision 1.8fn 2007/11/12 14:00:59+3 -2
Added two functions to 'see also' line.
Revision 1.7fn 2006/10/08 17:15:50+40 -33
Now able to concatenate with an empty matrix in the row dimension.
Revision 1.6fn 2006/05/23 15:50:33+13 -9
Bugfix: Did not set the rows and columns fields fully if one of the
two inputwas a numerical matrix while the other was a structure.
Revision 1.5fnielsen 2005/07/13 15:54:46+12 -1
Extended to handle numerical matrices as input.
Revision 1.4fnielsen 2005/05/31 14:58:56+2 -2
Bugfix: Did not work for 'dim'='columns' if 'columns' field was not defined.
Revision 1.3fnielsen 2005/01/07 20:15:09+33 -21
Bugfix: did not work if 'rows' and 'columns' field were not defined.
Revision 1.2fnielsen 2003/05/22 12:55:16+123 -19
Added the 'dim' property.
Revision 1.1fnielsen 2002/01/08 20:28:26None
Initial version (draft): Does not copy all field

Filename: brede_mat_cat_columns.m
Revision 1.2fn 2007/11/12 14:01:36+3 -2
Added brede_mat_cat_intercept to 'see also' line.
Revision 1.1fn 2007/01/09 12:33:29None
Initial version.

Filename: brede_mat_cat_intercept.m
Revision 1.1fn 2007/11/12 14:00:26None
Initial version.

Filename: brede_mat_cca.m
Revision 1.10fn 2007/11/08 22:54:35+15 -2
Now labels the columns and rows corresponding to the canonical
vectors.
Revision 1.9fn 2006/10/05 15:33:12+2 -2
Bugfix: Erroneous call to 'strcmp' function.
Revision 1.8fnielsen 2006/03/08 23:38:05+71 -18
Extended with inputComponentsLeft and InputComponentsRight properties.
Revision 1.7fnielsen 2005/04/27 17:13:57+26 -17
Extended to be able to handle integers as input to 'inputcomponents'
Revision 1.6fnielsen 2005/04/08 21:02:04+71 -24
Implemented the nuisance property.
Changed the included principal components from being those above the
mean to those above or equal to the mean.
Revision 1.5fnielsen 2005/04/06 18:20:16+21 -6
Extended help text with a second example.
Enabled to have numerical matrices as input.
Revision 1.4fnielsen 2005/04/05 17:09:34+31 -8
Added the 'InputComponents' property.
Revision 1.3fnielsen 2004/03/08 19:10:49+48 -10
Implemented the centering property.
Revision 1.2fnielsen 2003/03/28 20:49:16+48 -19
Extended help text.
Some internal code changes.
Revision 1.1fnielsen 2003/03/26 23:54:23None
Initial version.

Filename: brede_mat_center.m
Revision 1.6fn 2008/02/28 23:11:14+7 -4
Changes for combatibility with Octave.
Revision 1.5fn 2006/08/16 09:05:57+3 -3
Missing semicolons.
Revision 1.4fn 2006/07/31 17:11:43+24 -5
Now sets the description field with information about centering.
Revision 1.3fnielsen 2004/09/09 15:58:10+10 -4
Extended to handle NaN elements.
Revision 1.2fnielsen 2003/09/10 01:55:21+14 -4
Implemented the possibility for matrix as input.
Revision 1.1fnielsen 2002/09/25 15:28:54None
Initial version.

Filename: brede_mat_clustercoef.m
Revision 1.2fnielsen 2003/03/26 11:22:41+14 -1
Added check on input argument.
Revision 1.1fnielsen 2003/03/19 22:01:54None
Initial version.

Filename: brede_mat_concordance.m
Revision 1.2fn 2008/02/22 15:48:17+14 -5
Minor bugfix: did make a warning in connection with division by zero.
Revision 1.1fn 2007/11/16 17:09:34None
Initial version.

Filename: brede_mat_conncomp.m
Revision 1.6fn 2007/11/19 23:52:42+156 -119
Bugfix: Wrong error message
Implemented 'info' property.
Code indentation.
There are still some issues that need to be resolved for this
function: It may go in a infinite loop.
Revision 1.5fnielsen 2003/05/13 15:17:21+85 -30
Extended with the output property.
Revision 1.4fnielsen 2003/02/26 19:14:03+7 -2
Bugfix: Changed to handle cases where M.columns is a row or column vector.
Revision 1.3fnielsen 2002/11/11 16:24:07+6 -2
Included a error message of non-square matrices.
Revision 1.2fnielsen 2002/02/08 15:42:00+25 -2
Added sorting of the connected components.
Revision 1.1fnielsen 2001/04/28 17:49:11None
Initial version.

Filename: brede_mat_corrcoef.m
Revision 1.3fn 2006/08/28 16:23:10+10 -3
Extended to handle numerical matrices as input.
Revision 1.2fnielsen 2005/10/04 15:40:47+23 -6
Implement a less memory consuming version.
Revision 1.1fnielsen 2004/11/11 21:41:41None
Initial version.

Filename: brede_mat_cov.m
Revision 1.6fn 2008/03/12 14:17:01+99 -73
Implemented the 'normalize' property.
Revision 1.5fnielsen 2005/11/17 17:00:52+38 -14
Bugfix: Did not work if the input matrices differed in size.
Revision 1.4fnielsen 2005/01/26 18:03:32+19 -5
Implemented correct normalization for the missing value covariance.
Revision 1.3fnielsen 2005/01/21 19:21:29+57 -9
Extended to ignore NaN.
Revision 1.2fnielsen 2005/01/11 20:35:05+2 -2
Corrected erroneous help text.
Revision 1.1fnielsen 2004/11/11 21:43:41None
Initial version.

Filename: brede_mat_cumsum.m
Revision 1.1fn 2007/11/05 16:15:50None
Initial version.

Filename: brede_mat_density.m
Revision 1.2fnielsen 2003/12/02 11:10:01+11 -4
Extended to handle a numerical matrix as input.
Revision 1.1fnielsen 2003/03/19 18:38:19None
Initial version.

Filename: brede_mat_descendants.m
Revision 1.3fnielsen 2005/02/21 14:21:45+4 -2
Bugfix: did not work if the adjacency matrix defined a ring.
Revision 1.2fnielsen 2003/08/05 09:00:20+12 -5
Bugfix: Did not work if there were loops in the graph.
Help text extended with an example.
Revision 1.1fnielsen 2003/04/08 17:35:36None
Initial version.

Filename: brede_mat_digamma.m
Revision 1.3fnielsen 2006/01/31 15:55:45+6 -5
Changes in the help example.
Revision 1.2fnielsen 2003/09/10 17:06:35+5 -4
Bugfix: Could not iterate over multiple integer input values.
Revision 1.1fnielsen 2003/09/10 13:11:05None
Initial version.

Filename: brede_mat_dist.m
Revision 1.10fnielsen 2005/05/09 19:16:06+3 -3
Bugfix: Did not make result zero if input was zero - because of a
division by zero.
Revision 1.9fnielsen 2005/05/09 11:28:47+35 -20
Bugfix/change: CorrCoef and RawCorrCoef with missing values did not
produce the same result as R's pairwise complete correlation
coefficient.
Revision 1.8fnielsen 2004/09/16 17:48:51+31 -7
Extended to handle NaN for all types of distances.
Covariance is now normalized.
Revision 1.7fnielsen 2004/09/15 16:59:32+3 -2
Implemented handling of missing values for the 'corrcoef' distance.
Revision 1.6fnielsen 2004/03/22 13:48:28+2 -2
Missing semicolon.
Revision 1.5fnielsen 2004/02/03 15:23:27+47 -11
Bugfix: corrcoef distance was not the ordinary correlation coefficient
but rather a type where the mean was not removed. Now changed so the
old corrcoef is called rawcorrcoef while the one with centering is
called corrcoef.
Implemented the covariance distance and added description field.
Revision 1.4fnielsen 2002/08/28 10:47:29+13 -10
Now handle vector where all elements are zero.
Revision 1.3fnielsen 2002/01/14 13:18:17+25 -49
Added help text for distance property
Bugfix: wrong input text for distance property.
Revision 1.2fnielsen 2002/01/03 21:18:51+13 -8
Made the matrix multiplication faster.
Revision 1.1fnielsen 2001/04/30 08:53:23None
Initial version.

Filename: brede_mat_divide.m
Revision 1.3fn 2008/09/29 10:25:11+2 -2
Corrected wrong help text.
Revision 1.2fnielsen 2005/10/20 19:22:13+1 -5
Bugfix in description field.
Revision 1.1fnielsen 2005/10/20 19:17:51None
Initial version.

Filename: brede_mat_elemproduct.m
Revision 1.1fnielsen 2005/01/11 17:32:56None
Initial version

Filename: brede_mat_elimsingle.m
Revision 1.3fnielsen 2005/05/31 12:30:53+9 -1
Added example to help text.
Revision 1.2fnielsen 2003/02/05 18:50:49+11 -2
Extended to set the description field.
Revision 1.1fnielsen 2002/06/27 18:07:46None
Initial version.

Filename: brede_mat_elimstop.m
Revision 1.14fn 2007/07/04 17:13:22+2 -1
Added danish stop word list.
Revision 1.13fn 2006/03/29 23:30:10+7 -11
Added stop_personalityadjectives.txt.
Revision 1.12fnielsen 2005/05/31 18:14:12+15 -3
Help test correction
Example in help text constructed.
Revision 1.11fnielsen 2004/02/16 10:40:16+8 -5
Added a bit more to the help text.
Revision 1.10fnielsen 2003/04/27 22:51:01+2 -1
Enabled to use stop_brainanatomy.txt file.
Revision 1.9fnielsen 2003/04/16 12:48:20+2 -1
Added possibility to use stop_pubmed_neg2.txt.
Revision 1.8fnielsen 2003/04/15 11:46:57+17 -13
Correction: wrong error message
Extended to be able to read stop_lobaranatomy.txt.
Revision 1.7fnielsen 2003/02/05 20:53:30+33 -9
Added two new stop word file lists.
Revision 1.6fnielsen 2003/02/05 18:47:50+8 -2
Extended to set the description field.
Revision 1.5fnielsen 2003/01/29 18:35:49+9 -6
Added stop_medline.txt as a possible stop word list.
Revision 1.4fnielsen 2003/01/22 17:55:42+51 -8
Extended with filename and stopwords properties.
Revision 1.3fnielsen 2002/09/12 12:56:37+4 -3
Bugfix: Filepath to stop word file now dependent on path to brede.
Revision 1.2fnielsen 2002/09/12 09:35:59+5 -3
Corrected help text.
Revision 1.1fnielsen 2001/04/30 08:53:59None
Initial version.

Filename: brede_mat_elimzero.m
Revision 1.1fnielsen 2002/11/11 16:14:06None
Initial version.

Filename: brede_mat_fowlkesmallows.m
Revision 1.2fnielsen 2006/01/31 16:43:32+12 -2
Extended the help text with an example.
Revision 1.1fnielsen 2005/08/15 17:34:55None
Initial version.

Filename: brede_mat_getfield.m
Revision 1.1fnielsen 2002/08/22 16:27:13None
Initial version.

Filename: brede_mat_getrows.m
Revision 1.1fnielsen 2002/08/22 16:26:17None
Initial version.

Filename: brede_mat_glm.m
Revision 1.10fn 2008/04/23 18:50:10+10 -2
Now returns the contrast image.
Revision 1.9fn 2008/02/20 20:20:26+7 -5
Change the way numerical matrix input is handled.
Revision 1.8fn 2008/02/13 22:37:09+24 -4
Added testing of contrast and more information.
Revision 1.7fn 2007/11/21 18:59:55+8 -2
Changed the info message.
Revision 1.6fnielsen 2005/11/04 17:36:26+24 -7
Extended to handle none complete contrasts.
Revision 1.5fnielsen 2004/09/27 19:33:18+11 -4
Added more input check.
Revision 1.4fnielsen 2004/09/15 16:58:54+36 -5
Added info property.
Revision 1.3fnielsen 2004/09/07 19:46:58+5 -2
Implemented two-tailed t-test.
Revision 1.2fnielsen 2004/08/26 17:03:00+4 -4
Bugfix.
Revision 1.1fnielsen 2004/08/26 16:40:39None
Initial version.

Filename: brede_mat_glm_est.m
Revision 1.3fn 2008/02/13 18:05:59+7 -1
Added ability to use matrices as input arguments.
Revision 1.2fnielsen 2005/01/07 20:17:41+21 -6
Changed to not compute NaN elements.
Revision 1.1fnielsen 2004/08/26 16:41:26None
Initial version.

Filename: brede_mat_glm_testable.m
Revision 1.1fn 2008/02/13 22:25:45None
Initial version.

Filename: brede_mat_hkmc.m
Revision 1.7fn 2007/03/26 17:20:10+24 -7
Implemented the waitbar option for the info property.
Revision 1.6fnielsen 2005/02/03 11:56:41+2 -2
Correction of spelling error in help text.
Revision 1.5fnielsen 2004/10/27 17:14:22+2 -1
Added maxiterations.
Revision 1.4fnielsen 2004/10/27 16:24:26+7 -6
Bugfix for 'Info' property.
Revision 1.3fnielsen 2004/10/23 00:27:55+17 -10
Changed info messages.
Revision 1.2fnielsen 2004/10/15 10:42:12+12 -3
Changed log message.
Revision 1.1fnielsen 2004/10/11 17:12:39None
Initial version.

Filename: brede_mat_hnmf.m
Revision 1.4fn 2009/01/29 13:12:03+11 -4
Added extra check and conversion for input argument.
Revision 1.3fnielsen 2004/11/18 17:05:57+2 -6
Changed to use multiple runs even when there is only one component.
Revision 1.2fnielsen 2004/11/05 20:51:07+9 -9
Bugfix on components.
Revision 1.1fnielsen 2004/11/02 18:32:29None
Initial version.

Filename: brede_mat_hubauthority.m
Revision 1.1fnielsen 2001/04/30 08:54:15None
Initial version.

Filename: brede_mat_hulllevel.m
Revision 1.3fn 2006/06/30 21:04:28+33 -15
Workaround in connection with qhull's problem with degenerate data.
Revision 1.2fnielsen 2005/03/11 00:10:47+2 -2
Bugfix: Did not work if dimension was higher than the number of points.
Revision 1.1fnielsen 2005/03/10 23:39:41None
Initial version.

Filename: brede_mat_ibfa.m
Revision 1.2fn 2007/11/09 00:15:19+26 -7
Now set rows and columns field corresponding to factors.
Revision 1.1fnielsen 2005/05/18 17:16:24None
Initial version.

Filename: brede_mat_ica.m
Revision 1.5fn 2008/03/12 14:32:56+3 -3
Typo corrections.
Revision 1.4fnielsen 2004/09/22 14:26:23+11 -3
Bugfix in the info property.
Revision 1.3fnielsen 2004/09/21 19:04:08+17 -3
Added Info property.
Revision 1.2fnielsen 2003/03/26 13:43:42+87 -33
Extended with the source property.
Revision 1.1fnielsen 2003/02/26 19:16:44None
Initial version.

Filename: brede_mat_icc.m
Revision 1.6fn 2007/06/28 20:57:16+21 -6
Changed Concordance and implemented nickerson.
Revision 1.5fn 2007/06/27 20:16:31+105 -28
Implemented a number of intraclass correlation coefficients.
Revision 1.4fn 2007/06/26 15:53:54+78 -13
Implemented the type property.
Revision 1.3fn 2007/05/31 10:33:47+64 -17
Added "Early definition.
Revision 1.2fn 2007/05/22 17:47:27+3 -2
Extension/correction in filename.
Revision 1.1fn 2007/04/20 14:19:34None
Initial version.

Filename: brede_mat_impute.m
Revision 1.3fnielsen 2005/02/24 19:02:11+4 -3
Bugfix: missing semicolon, and description field had the wrong text.
Revision 1.2fnielsen 2005/02/21 15:48:24+61 -13
Extended with 'type' property.
Revision 1.1fnielsen 2005/02/16 21:20:43None
Initial version.

Filename: brede_mat_inv.m
Revision 1.1fnielsen 2006/01/26 19:35:16None
Initial version.

Filename: brede_mat_iproduct.m
Revision 1.3fnielsen 2005/01/26 18:13:00+54 -19
Changes for missing value handling.
Revision 1.2fnielsen 2003/04/16 10:41:28+4 -5
Major bugfix: The input matrix was returned as the inner product.
Revision 1.1fnielsen 2003/03/26 15:47:04None
Initial version.

Filename: brede_mat_isnan.m
Revision 1.1fn 2008/03/17 10:19:49None
Initial version.

Filename: brede_mat_kmc.m
Revision 1.20fn 2008/03/19 15:26:58+22 -18
Change around debug informations.
Code changes to accomodate octave.
Revision 1.19fn 2008/03/19 14:45:07+2 -2
Added missing semicolon.
Revision 1.18fn 2007/09/21 15:36:30+2 -2
Missing semicolon.
Revision 1.17fn 2007/08/10 15:33:52+10 -19
Added row and column annotation.
Revision 1.16fn 2007/03/26 17:21:11+25 -14
Bugfix: Error in connection with error message.
Implement waitbar option for info property.
Revision 1.15fn 2007/03/26 15:10:31+3 -3
Slight change in help text example for better plot.
Revision 1.14fn 2006/09/22 16:37:32+22 -4
Extended the help text
Extended to handle matrices as input.
Revision 1.13fnielsen 2005/06/17 17:31:30+2 -9
Output variation deprecated since it is not presently correct to
multiple to the 3 output argument matrices.
Revision 1.12fnielsen 2005/02/03 11:56:18+1 -2
Help text was cutoff.
Revision 1.11fnielsen 2004/10/26 22:59:17+25 -19
Code changes and change in info debug messages.
Revision 1.10fnielsen 2004/10/15 19:07:41+36 -7
Extended to with the scaling matrix.
Revision 1.9fnielsen 2004/09/15 17:03:09+3 -3
Extended to handle string as input for the info property.
Revision 1.8fnielsen 2004/09/15 16:32:26+118 -70
Working version able to handle missing values.
Revision 1.7fnielsen 2004/09/14 17:08:58+163 -115
Multiple runs partially implemented.
Revision 1.6fnielsen 2004/09/09 16:37:30+3 -3
Small corrections.
Revision 1.5fnielsen 2004/09/08 19:55:24+58 -24
Extended to handle missing data. (Might not work correctly yet in that respect!)
Revision 1.4fnielsen 2003/09/09 12:32:35+2 -2
Correction in help text: Wrong default of type. Changed to mean.
Revision 1.3fnielsen 2003/03/14 15:39:21+2 -2
Corrected wrong functions synopsis.
Revision 1.2fnielsen 2003/03/14 15:29:09+76 -37
Added the assignment property.
Revision 1.1fnielsen 2003/03/07 20:21:43None
Initial version. Taken from lyngby_km_main.

Filename: brede_mat_knn.m
Revision 1.1fn 2008/06/04 19:26:29None
Initial version.

Filename: brede_mat_krprod.m
Revision 1.1fn 2008/08/21 13:55:33None
Initial version.

Filename: brede_mat_kummer.m
Revision 1.2fn 2007/02/19 17:49:46+4 -1
Added an example.
Revision 1.1fn 2007/02/19 17:40:16None
Initial version.

Filename: brede_mat_lad_est.m
Revision 1.2fn 2008/06/05 09:54:50+3 -3
Minor clarification in help text.
Revision 1.1fn 2008/04/14 18:38:26None
Initial version.

Filename: brede_mat_loganplot.m
Revision 1.8fn 2008/06/10 17:12:42+3 -1
Note about lacking validation in help text.
Revision 1.7fn 2008/03/12 14:27:31+3 -3
Bigfix to work with octave.
Revision 1.6fn 2008/01/17 14:57:15+9 -5
Correction in info messages and change in error message.
Missing semicolons added.
Revision 1.5fn 2007/11/15 17:39:05+6 -5
Bugfix: Did not set the endindex and k2prime property correctly.
Revision 1.4fn 2007/11/05 16:38:34+50 -30
Implemented the 'TimingType' property
Now uses brede_mat_cumsum to compute the integrated values.
Revision 1.3fn 2007/10/30 14:22:32+22 -9
Correction in 'info' display messages.
Extension of help text.
Revision 1.2fn 2007/10/24 13:37:47+180 -146
Added startindex and endindex property.
New indentation of code.
Revision 1.1fn 2007/10/23 18:28:40None
Initial draft.

Filename: brede_mat_mat2cel.m
Revision 1.2fn 2008/06/12 17:05:59+2 -2
Bugfix in connection with 'description' field.
Revision 1.1fn 2008/06/12 15:27:04None
Initial version.

Filename: brede_mat_mat2html.m
Revision 1.6fn 2007/06/27 18:07:02+3 -3
Bugfix in connection with 'border' HTML attribute.
Revision 1.5fnielsen 2004/11/30 12:48:16+5 -1
Bugfix/Extension: Did not work for cellstr and string.
Revision 1.4fnielsen 2004/10/28 16:57:46+6 -5
Now uses brede_struct_guesstype to guess the input argument.
Revision 1.3fnielsen 2004/09/09 16:34:42+2 -2
Bugfix: Did not report errors correctly when reading the properties.
Revision 1.2fnielsen 2004/09/08 15:20:44+21 -6
Extended to write handle 'roi' and 'exp' structures in the rows and columns.
Revision 1.1fnielsen 2004/08/27 11:41:47None
Initial version.

Filename: brede_mat_mat2loc.m
Revision 1.2fn 2006/08/17 12:41:03+70 -16
Implemented conversion with the matrix elements indicated x, y, and z coordinates.
Revision 1.1fnielsen 2003/09/19 11:04:32None
Initial version.

Filename: brede_mat_mat2mat.m
Revision 1.5fn 2007/11/05 11:58:47+16 -4
Added a more appropriate description for empty matrices input.
Extended help text.
Revision 1.4fn 2006/08/17 10:44:55+6 -2
Extra error check on the number of dimensions on numerical arrays.
Revision 1.3fnielsen 2006/03/08 23:37:36+5 -1
Bugfix/extension: Some functions did not work if the input was a
logical matrix.
Revision 1.2fnielsen 2005/03/03 21:41:12+2 -1
Bugfix: Did not work for numerical matrix input.
Revision 1.1fnielsen 2005/02/24 11:33:32None
Initial version.

Filename: brede_mat_mat2str.m
Revision 1.3fn 2008/08/21 14:48:49+2 -2
Missing semicolon.
Revision 1.2fnielsen 2005/10/20 15:22:17+4 -1
Extended to handel numerical matrices as input.
Revision 1.1fnielsen 2005/10/20 14:29:28None
Initial version.

Filename: brede_mat_mat2tex.m
Revision 1.2fnielsen 2004/09/21 18:45:01+99 -11
Updated.
Revision 1.1fnielsen 2004/09/10 17:11:14None
Initial version.

Filename: brede_mat_mat2vol.m
Revision 1.8fn 2009/10/14 18:17:27+9 -4
Bugfix in connection with setting the description field.
Revision 1.7fn 2008/03/12 14:50:35+2 -2
Bugfix for octave in conditional.
Revision 1.6fn 2007/11/01 19:33:59+111 -31
Extended with the 'row' property.
Revision 1.5fn 2007/11/01 12:39:22+85 -85
Changed indentation of code.
Revision 1.4fnielsen 2004/06/01 20:55:27+7 -1
Enabled to use information from a 'ext' structure when filling out the
description field.
Revision 1.3fnielsen 2003/11/28 15:35:07+5 -10
Corrected an error text.
Made computation of indices faster.
Revision 1.2fnielsen 2003/09/12 17:21:55+32 -2
Added generation of origin and voxelSize.
Revision 1.1fnielsen 2003/09/09 13:07:38None
Initial version.

Filename: brede_mat_match.m
Revision 1.5fn 2009/04/30 15:16:00+7 -7
Bugfix: Did not match columns correctly.
Changed to return NaN for elements that are not available.
Revision 1.4fn 2007/10/30 23:38:04+11 -3
Bugfix: Did not copy fields correctly.
Revision 1.3fn 2007/10/24 10:55:21+141 -140
New indentation according to matlab-mode.
Revision 1.2fn 2007/10/23 16:25:08+111 -24
Implemented the items, info and set property.
Revision 1.1fnielsen 2005/11/09 16:05:22None
Initial version.

Filename: brede_mat_mean.m
Revision 1.9fn 2008/02/28 23:10:02+3 -3
Changes for combatibility with Octave.
Revision 1.8fn 2006/06/30 15:46:37+6 -4
Bugfix: Warnings in connection with numerical matrix input.
Revision 1.7fnielsen 2006/03/14 16:33:20+3 -3
Minor bugfix: Missing semicolon.
Revision 1.6fnielsen 2005/11/04 17:23:18+23 -4
Made a more informative description field for output structure.
Revision 1.5fnielsen 2005/08/31 14:32:59+10 -8
Bugfix: Was not able to set the 'columns' and 'rows' fields in many
cases.
Revision 1.4fnielsen 2005/03/11 00:11:17+27 -10
Extended with 'PeelingColumnCentroid'.
Revision 1.3fnielsen 2004/09/10 17:10:35+10 -10
Reordering og row/columns
Revision 1.2fnielsen 2004/09/09 13:23:15+48 -9
Extended with the 'type' property.
Revision 1.1fnielsen 2004/09/08 19:55:41None
Initial version.

Filename: brede_mat_minus.m
Revision 1.3fnielsen 2006/02/01 19:07:58+47 -14
Change: Now does NOT match string columns before subtracting columns.
Revision 1.2fnielsen 2005/11/10 13:42:31+110 -40
Extended to handle vectorial and scalar input.
Revision 1.1fnielsen 2005/05/31 15:14:32None
Initial version.

Filename: brede_mat_mma.m
Revision 1.1fnielsen 2005/09/27 20:24:27None
Initial version.

Filename: brede_mat_mrtm.m
Revision 1.5fn 2008/06/10 17:11:19+3 -1
Note in help text about lacking validation.
Revision 1.4fn 2008/03/12 14:33:27+2 -2
Typo corrections.
Revision 1.3fn 2007/12/04 15:27:05+5 -4
Updates and correction in help text.
Revision 1.2fn 2007/11/16 19:53:31+11 -1
Bugfix: Reading of TimingType property was not implemented.
Revision 1.1fn 2007/11/15 17:41:40None
Initial version - not yet check properly.

Filename: brede_mat_mutualinfo.m
Revision 1.2fnielsen 2003/06/06 22:55:16+62 -9
Extended with the output property.
Revision 1.1fnielsen 2003/02/27 16:14:30None
Initial version.

Filename: brede_mat_negate.m
Revision 1.2fn 2009/10/20 12:50:35+7 -6
Minor correction in description and a semicolon
Revision 1.1fn 2009/10/20 12:40:32None
Initial version.

Filename: brede_mat_nls_est.m
Revision 1.3fn 2008/06/05 18:17:16+2 -16
Erased the reading of 'components' property as this was not implemented.
Revision 1.2fn 2008/04/16 22:22:58+147 -22
Added properties Binit and info.
Code changes in the algorithm.
Revision 1.1fn 2008/04/15 15:47:31None
Initial version.

Filename: brede_mat_nlsb_est.m
Revision 1.2fn 2008/06/05 18:17:51+19 -9
Sat the default to 'bwh' method.
Revision 1.1fn 2008/04/17 14:47:21None
Initial version.

Filename: brede_mat_nmf.m
Revision 1.18fn 2008/02/28 22:57:24+17 -12
Change for combatility with octave.
Revision 1.17fnielsen 2006/02/01 17:23:04+54 -15
Implmented the 'ToleranceZeroWH' property
Change in the the default toleranceZeroWH behavior.
Revision 1.16fnielsen 2006/01/31 16:41:44+15 -1
Implemented the 'seed' property.
Revision 1.15fnielsen 2006/01/26 19:34:58+39 -8
Bugfix in connection with hidden Winit and Hinit properties.
Revision 1.14fnielsen 2005/09/16 10:51:23+16 -4
Extended with the 'Auto' choice for the 'components' property.
Revision 1.13fnielsen 2005/05/31 21:40:03+13 -1
Extended help text with example.
Revision 1.12fnielsen 2005/03/30 12:11:53+16 -1
Implemented the 'iterationProbe' property.
Revision 1.11fnielsen 2004/11/11 21:55:18+3 -3
Increased the default number of maxiterations.
Revision 1.10fnielsen 2004/09/22 15:39:44+3 -3
Extended to handle string as input to the info property.
Revision 1.9fnielsen 2003/08/19 03:24:08+3 -1
Added description of 'cost' in help text.
Revision 1.8fnielsen 2003/08/18 20:57:20+23 -2
Implemented the 'Runs' property.
Revision 1.7fnielsen 2003/07/25 17:38:37+13 -5
Added information about the properties.
Revision 1.6fnielsen 2003/04/03 17:17:57+8 -4
Extended/Bugfix to handle cases where input M does not have rows or
columns fields.
Revision 1.5fnielsen 2003/02/27 19:48:54+5 -4
Corrected text in description field.
Revision 1.4fnielsen 2003/02/20 19:53:39+56 -13
Extended to return 3 matrices.
Revision 1.3fnielsen 2003/02/05 18:47:11+18 -1
Extended to set the description field.
Revision 1.2fnielsen 2003/01/31 20:07:01+8 -4
Extended help text.
Revision 1.1fnielsen 2003/01/29 18:37:10None
Initial version.

Filename: brede_mat_nmf_normalize.m
Revision 1.1fn 2008/07/10 16:33:02None
Initial version.

Filename: brede_mat_novelty.m
Revision 1.2fnielsen 2004/05/18 15:28:03+2 -2
Made robust for matrices with all zeroes.
Revision 1.1fnielsen 2003/04/04 00:57:20None
Initial version.

Filename: brede_mat_ones.m
Revision 1.2fn 2006/05/23 20:57:39+2 -2
Minor changes in help text.
Revision 1.1fnielsen 2005/11/04 17:36:35None
Initial version.

Filename: brede_mat_onmf.m
Revision 1.2fn 2008/06/17 16:16:34+25 -9
Extended help text.
Changes in input checking.
Revision 1.1fnielsen 2006/02/20 18:18:43None
Draft version.

Filename: brede_mat_oproduct.m
Revision 1.1fnielsen 2005/01/26 16:15:55None
Initial version.

Filename: brede_mat_orthopcaspace.m
Revision 1.2fn 2007/11/29 18:41:18+2 -2
Typo in 'see also' of help text.
Revision 1.1fn 2007/11/29 18:38:54None
Initial version.

Filename: brede_mat_orthospace.m
Revision 1.4fn 2009/03/26 01:32:38+22 -9
Bugfix: did not perform well in connection with singular transformations.
Revision 1.3fnielsen 2005/11/11 16:22:06+23 -10
Extended to handle empty subspace matrices.
Revision 1.2fnielsen 2005/09/22 09:26:15+8 -8
Bugfix: Did not work if first input argument did not have a 'row'
field.
Internal code change: Short circuit logicals.
Revision 1.1fnielsen 2005/04/07 16:54:28None
Initial version.

Filename: brede_mat_partcorrcoef.m
Revision 1.9fn 2008/09/18 15:16:23+2 -2
Correction in function header in help text.
Revision 1.8fn 2008/02/22 13:23:22+3 -3
Bugfix: Changed to not issue a divide by zero warning.
Revision 1.7fn 2007/11/01 19:24:26+82 -82
New code indentation.
Revision 1.6fn 2007/11/01 19:23:31+24 -6
Extended to handle input with numerical matrices. Extensions in input checks.
Revision 1.5fn 2007/09/29 22:08:13+19 -2
Added yet another implementation.
Revision 1.4fnielsen 2005/10/20 18:38:34+7 -3
Now uses the description field from the input 'mat' structures to set
the description field of the output structure.
Revision 1.3fnielsen 2005/07/14 16:47:55+32 -13
Change in code to make it more memory efficient.
Revision 1.2fnielsen 2005/04/07 16:23:01+7 -5
Corrected the help text.
Revision 1.1fnielsen 2004/11/11 21:42:42None
Initial version.

Filename: brede_mat_partcorrcoef2csv.m
Revision 1.1fn 2008/09/18 15:55:27None
Initial version.

Filename: brede_mat_partcorrcoef_test.m
Revision 1.16fn 2009/09/25 12:40:36+20 -6
Implemented 'seed' property.
Revision 1.15fn 2009/08/19 10:21:27+6 -1
Added info message.
Revision 1.14fn 2009/08/05 17:17:48+18 -13
Added more running info.
Revision 1.13fn 2008/09/18 16:24:32+4 -4
Changed how often the waitbar is updated.
Revision 1.12fn 2008/06/20 10:30:54+3 -2
Minor change to get rid of warning message.
Revision 1.11fn 2008/02/20 21:01:42+35 -23
Major bugfix/major change: PositiveTail were computed as the lower
tail area, while NegativeTail were computed as the upper tail
area. This was non-intuitive and wrong. The property has now been
changed so the function will error when called with NegativeTail and
PositiveTail. Instead UpperTail should be used to computed the upper
tail area and LowerTail the lower tail area.
Revision 1.10fn 2007/06/12 23:48:37+4 -3
Added brede_mat_partcorrcoef_tvalue to help text.
Revision 1.9fn 2006/10/08 17:15:01+56 -38
Bugfix/extension: Now able to handle cases with zero or less degrees
of freedom.
Revision 1.8fn 2006/08/28 17:05:34+2 -2
Change in the check on the number of input arguments.
Revision 1.7fnielsen 2006/02/14 18:04:32+46 -13
Extended to handle one-tailed test.
Revision 1.6fnielsen 2005/11/11 16:21:22+2 -2
Minor fix: Missing semicolon.
Revision 1.5fnielsen 2005/11/11 13:32:06+57 -13
Bugfix: The 'twotailed' test type might error in connection with
correlation coefficient above 1 due to numerical errors.
Internal code change: Speedup of the computation of the
'MaxPermuteTwotailed' test by precomputing normalized matrices.
Revision 1.4fnielsen 2005/10/07 13:07:33+22 -8
Implemented maxiterations property.
Revision 1.3fnielsen 2005/08/23 17:46:09+35 -7
Implemented the 'info' property.
Revision 1.2fnielsen 2005/08/16 18:53:20+65 -2
Implemented the maximum permutation test.
Revision 1.1fnielsen 2005/08/16 16:47:20None
Initial version.

Filename: brede_mat_partcorrcoef_tvalue.m
Revision 1.1fn 2007/06/12 23:48:58None
Initial version.

Filename: brede_mat_pcr_est.m
Revision 1.1fn 2008/04/16 22:21:22None
Initial version.

Filename: brede_mat_permute.m
Revision 1.6fn 2008/03/12 14:56:36+3 -3
Bugfix for octave in conditionals.
Revision 1.5fn 2006/11/03 14:08:32+52 -8
Implemented the 'type' property.
Revision 1.4fn 2006/08/29 12:42:44+8 -2
Extended with an example and added a semicolon.
Revision 1.3fnielsen 2005/11/11 13:33:22+11 -6
Added an extra output argument that return the permutation indices.
Revision 1.2fnielsen 2005/04/07 16:23:35+3 -3
Correction of help synopsis.
Revision 1.1fnielsen 2004/11/11 22:00:59None
Initial version.

Filename: brede_mat_pinv.m
Revision 1.1fn 2008/08/21 16:46:47None
Initial draft version.

Filename: brede_mat_plot_bullseye.m
Revision 1.6fnielsen 2004/04/05 15:47:56+29 -23
Implemented the MaxPoints property.
Changed so the points are not initized on the x axis.
Revision 1.5fnielsen 2002/08/21 19:27:36+127 -34
More work on positioning problem.
Revision 1.4fnielsen 2002/08/19 17:23:25+27 -2
Extended to handle bib structures.
Revision 1.3fnielsen 2002/02/13 16:06:41+7 -5
Disabeled SVD.
Revision 1.2fnielsen 2002/02/13 15:52:05+15 -10
Bugfix: Error in connection with drawing of the links.
Revision 1.1fnielsen 2002/01/03 17:49:26None
Initial version.

Filename: brede_mat_plot_clusterbush.m
Revision 1.13fn 2008/04/10 13:31:45+3 -3
Mentioning of brede_plot in help text.
Revision 1.12fn 2008/04/10 13:31:11+65 -9
Extended with LineColor and NodeColor properties.
Changes around FontSize.
Revision 1.11fn 2007/03/26 17:21:44+12 -7
Bugfix: Did not work if input matrix structure did not have a column field.
Revision 1.10fnielsen 2006/01/31 18:11:15+10 -5
Bugfix: did not handle matrices were the columns where voxel
coordinates.
Now explicitly sets the tick labels.
Revision 1.9fnielsen 2004/11/18 17:04:29+117 -66
Extended with the NodeOrdering property.
Revision 1.8fnielsen 2004/11/18 14:17:20+18 -12
Extended NodeTextType with LeftWTA and RightWTA.
Revision 1.7fnielsen 2004/11/11 21:58:48+8 -4
Changes in the rendering of node texts.
Revision 1.6fnielsen 2004/10/21 15:25:54+18 -6
Added Fontsize property.
Revision 1.5fnielsen 2004/10/15 19:06:47+28 -8
Resolved merging conflict.
Revision 1.4fnielsen 2004/10/15 08:58:42+9 -4
Now erase current axis first and adjust the size of the axis.
Revision 1.3fnielsen 2004/10/13 21:37:02+7 -7
Bugfix for numberOfTexts property.
Revision 1.2fnielsen 2004/10/12 21:58:49+27 -23
Implemented the numberoftexts property.
Revision 1.1fnielsen 2004/10/06 19:21:37None
Initial version. Does not working completely.

Filename: brede_mat_plot_count.m
Revision 1.7fnielsen 2005/02/24 11:49:50+13 -12
Bugfix: Did not work if 'columns' field was not defined.
Revision 1.6fnielsen 2004/11/10 19:19:57+2 -2
Disabled the setting of color.
Revision 1.5fnielsen 2003/02/26 18:15:27+17 -5
Extended to label y-axis with information from 'bib' structures.
Revision 1.4fnielsen 2003/01/22 17:21:47+37 -6
Implemented the xaxis property.
Revision 1.3fnielsen 2002/11/11 16:20:57+33 -3
Extended with 'points' property.
Revision 1.2fnielsen 2001/02/01 13:43:55+16 -4
Bugfix: did not work as it used a variabel that wasn't defined.
Revision 1.1fnielsen 2001/01/24 01:21:57None
Initial version.

Filename: brede_mat_plot_lines.m
Revision 1.4fn 2007/11/15 15:23:09+86 -85
Bugfixes: Changes due to warnings when the matrix only had one row.
Code indentation.
Revision 1.3fnielsen 2005/05/23 21:45:10+33 -6
Added a legend.
Added the linewidth property.
Revision 1.2fnielsen 2005/02/24 20:41:46+2 -2
Correct xlabel that were not necessarily correct.
Revision 1.1fnielsen 2005/02/07 18:53:25None
Initial version.

Filename: brede_mat_plot_mds.m
Revision 1.12fnielsen 2004/06/02 16:46:05+2 -2
Changed call from brede_loc_vol to brede_loc_loc2vol.
Revision 1.11fnielsen 2003/04/11 16:41:07+54 -3
Implement a rowColorLabels property.
Revision 1.10fnielsen 2003/04/03 17:33:46+24 -1
Extended to plot Ext structures.
Revision 1.9fnielsen 2003/03/14 09:20:36+42 -21
Bug fix: Did not work for 'bib' structures and did not make the
context menu correctly for pmid fields that were strings.
Now writes the number of the principal component next to the axis.
Revision 1.8fnielsen 2002/06/12 11:53:32+59 -39
Extended to handle exp structures that are cell arrays.
Extended to handle missing BrainMap information.
Revision 1.7fnielsen 2002/02/06 10:53:01+25 -10
(?) Axis adjustment.
Revision 1.6fnielsen 2001/07/11 14:57:18+359 -118
Extended with 'both' 'type' property.
Revision 1.5fnielsen 2001/07/02 20:42:43+107 -64
Extended with subplots.
Revision 1.4fnielsen 2001/06/19 18:35:51+13 -2
Implemented 'Points' property.
Revision 1.3fnielsen 2001/06/04 13:56:57+4 -4
Bugfix: The correct dimensions were not selected for the labelling of
the axes.
Revision 1.2fnielsen 2001/04/28 17:53:38+160 -7
Extended with Talairach visualization of points.
Revision 1.1fnielsen 2001/01/24 00:51:53None
Intial version with limited functionality.

Filename: brede_mat_plot_partcorrcoef_evolve.m
Revision 1.3fn 2009/03/25 20:32:51+43 -10
Added bootstrap property
Extended to also render 97.5% and 2.5% thresholds.
Revision 1.2fn 2008/05/28 19:30:03+11 -3
Changed labeling on plot.
Revision 1.1fn 2008/04/10 15:12:43None
Initial draft version.

Filename: brede_mat_plot_path.m
Revision 1.1fnielsen 2001/02/07 09:11:04None
Initial version.

Filename: brede_mat_plot_targ.m
Revision 1.1fnielsen 2001/02/07 10:20:06None
Initial version.

Filename: brede_mat_product.m
Revision 1.7fnielsen 2005/05/31 18:15:34+17 -23
Included an error message for wrong size of input arguments.
Code reorganization.
Revision 1.6fnielsen 2003/06/06 19:26:55+34 -4
Extended to setup description more thouroughly.
Revision 1.5fnielsen 2003/02/07 17:36:28+4 -4
Did not copy all fields.
Revision 1.4fnielsen 2002/09/30 16:41:12+21 -5
Extended to handle matrix input as the second argument.
Revision 1.3fnielsen 2002/02/13 15:04:54+4 -4
Bugfix: Did not copy the fields properly.
Revision 1.2fnielsen 2001/07/27 23:14:38+21 -9
Changed to be able to handle a ordinary matrix as the first input.
Revision 1.1fnielsen 2001/04/30 08:50:53None
Initial version.

Filename: brede_mat_rankindicator.m
Revision 1.1fnielsen 2005/02/04 18:46:50None
Initial version.

Filename: brede_mat_reconerror.m
Revision 1.4fnielsen 2004/10/14 17:03:55+30 -20
Enabled to handle missing values and zero subspace.
Revision 1.3fnielsen 2003/04/16 12:48:56+91 -20
Added the subspaces property.
Revision 1.2fnielsen 2003/03/26 11:10:54+23 -7
Changed to also handle only L and R matrix (not middle matrix) as input arguments.
Revision 1.1fnielsen 2003/02/20 19:54:28None
Initial version.

Filename: brede_mat_roc.m
Revision 1.1fnielsen 2005/05/09 18:05:46None
Initial version.

Filename: brede_mat_rows2strs.m
Revision 1.1fnielsen 2005/10/31 16:06:04None
Initial version.

Filename: brede_mat_scale.m
Revision 1.13fn 2008/05/15 16:12:42+21 -8
Changed code for 'idf' type to work better with large sparse matrices.
Revision 1.12fnielsen 2005/04/15 15:56:42+15 -7
Implemented the 'ColumnZScore'
Revision 1.11fnielsen 2004/10/27 16:25:39+12 -3
Added the rowabsmax for type.
Revision 1.10fnielsen 2004/09/09 16:36:41+83 -24
Extended with a number of new scaling types.
Revision 1.9fnielsen 2004/09/08 19:56:15+28 -4
Implemented ignoring of NaN.
Revision 1.8fnielsen 2004/08/23 16:16:01+12 -3
Implemented 'sqrt' scaling.
Revision 1.7fnielsen 2004/01/30 13:31:42+8 -2
Extended the help text.
Revision 1.6fnielsen 2004/01/23 17:37:25+9 -7
Implemented log2(x+1) scaling.
Revision 1.5fnielsen 2003/11/22 15:47:43+7 -2
Extended the help text.
Revision 1.4fnielsen 2003/02/05 18:50:27+17 -3
Extended to set the description field.
Revision 1.3fnielsen 2002/08/16 12:37:33+15 -8
Added the rowssr.
Adjusted the help text.
Revision 1.2fnielsen 2001/07/13 21:24:31+59 -2
Added 'Inverse document frequency'.
Revision 1.1fnielsen 2001/07/02 22:54:59None
Initial version.

Filename: brede_mat_sem.m
Revision 1.14fn 2008/07/01 14:13:52+3 -2
Added to 'see also'
Revision 1.13fn 2008/06/17 14:54:15+1 -3
Removed 'Draft' from help text.
Revision 1.12fn 2008/02/28 23:16:33+18 -15
Code clean up.
Revision 1.11fn 2007/01/09 23:03:07+14 -8
Fix around info figure.
Revision 1.10fn 2006/12/19 13:16:07+16 -10
Change in functional interface with the 'Mask' property: Now
NaN-values indicate parameters that are free to vary.
Revision 1.9fn 2006/10/31 18:46:17+8 -3
Added to help text.
Revision 1.8fn 2006/10/06 15:28:05+242 -117
Extended with diagonal noise model.
Revision 1.7fn 2006/10/05 12:52:36+2 -2
Correction in 'See also' help text.
Revision 1.6fn 2006/06/28 17:12:52+4 -4
Changes in the property Mask.
Revision 1.5fn 2006/06/27 17:32:49+139 -74
Corrections.
Revision 1.4fnielsen 2006/03/14 02:55:26+26 -1
Partial implementation of a maximum likelihood estimation.
Revision 1.3fnielsen 2006/03/10 15:11:28+3 -3
Minor change.
Revision 1.2fnielsen 2006/03/08 23:34:51+135 -21
Implemented new optimization.
Revision 1.1fnielsen 2006/03/01 20:47:16None
Initial version.

Filename: brede_mat_sem_aic.m
Revision 1.1fn 2007/01/10 18:19:28None
Initial version.

Filename: brede_mat_sem_bic.m
Revision 1.2fn 2008/07/01 14:10:50+5 -3
Bugfix: Did not work if Psi input argument was not given.
Revision 1.1fn 2007/01/10 18:15:18None
Initial version.

Filename: brede_mat_sem_grow.m
Revision 1.4fn 2008/07/01 14:15:46+10 -10
Corrections in help text.
Changes in code.
Revision 1.3fn 2007/01/09 22:58:58+33 -10
Implemented Knew property.
Revision 1.2fn 2007/01/09 13:38:34+6 -5
Changes in 'info' display.
Revision 1.1fn 2006/12/19 13:15:07None
Initial version.

Filename: brede_mat_sem_loglikelihood.m
Revision 1.2fn 2007/01/09 22:14:21+25 -10
Error in computation of the likelihood! Now corrected.
Now is able to compute the Psi within the function.
Revision 1.1fn 2006/12/19 13:15:19None
Initial version.

Filename: brede_mat_skewness.m
Revision 1.3fnielsen 2004/09/16 11:51:36+3 -3
Bugfix: did not work correctly for vectors.
Revision 1.2fnielsen 2004/04/02 16:26:31+3 -3
Changed to be robust to input with only zeros.
Revision 1.1fnielsen 2003/04/02 16:40:04None
Initial version.

Filename: brede_mat_sort.m
Revision 1.1fnielsen 2005/07/13 15:32:09None
Initial version.

Filename: brede_mat_std.m
Revision 1.1fnielsen 2004/09/09 16:34:58None
Initial version.

Filename: brede_mat_submatrix.m
Revision 1.9fn 2009/08/04 11:53:31+148 -112
Implemented the 'allnnan' for the 'rows' and 'columns' property.
Revision 1.8fn 2007/07/13 17:13:52+11 -3
Bugfix: Wrong error message.
Added an example to the help text.
Revision 1.7fnielsen 2005/12/05 11:41:16+50 -8
Extended the error messages.
Revision 1.6fnielsen 2005/10/20 14:56:49+20 -4
Implemented the 'description' field.
Revision 1.5fnielsen 2004/09/15 17:02:34+4 -3
Changed the description field.
Revision 1.4fnielsen 2003/11/28 15:10:50+2 -2
Bugfix: Did not copy the columns field correctly if there were
multiple rows.
Revision 1.3fnielsen 2003/04/15 17:44:18+11 -3
Bugfix: did not change the rows and columns fields.
Revision 1.2fnielsen 2003/03/26 23:54:48+17 -6
Implmented the columns property.
Revision 1.1fnielsen 2003/03/26 20:28:28None
Initial version.

Filename: brede_mat_sum.m
Revision 1.4fn 2008/07/11 11:06:58+15 -7
Fix: The description field was set wrongly for 'RowSum'.
Revision 1.3fn 2006/07/21 09:37:46+12 -4
Extended to set the 'description' field.
Revision 1.2fnielsen 2004/11/11 19:28:54+5 -5
Bugfix: Did not return the correct rows and columns labels.
Revision 1.1fnielsen 2004/09/09 15:24:06None
Initial version.

Filename: brede_mat_svd.m
Revision 1.12fn 2008/04/16 21:38:02+20 -1
Now set the 'columns' field of the structure.
Added the info property.
Revision 1.11fn 2008/02/28 23:12:42+4 -4
Change for combatibility with Octave.
Revision 1.10fn 2007/11/29 18:40:09+137 -131
Bugfix: Could not handle empty matrices.
Extended to handle a numerical matrix input.
New code indentation.
Help text example.
Revision 1.9fnielsen 2006/03/08 13:20:55+4 -5
Bugfix: In Matlab 7 it warned about a assignment. Fix.
Revision 1.8fnielsen 2006/03/07 18:08:49+3 -4
Minor change for Matlab 7.0.4 warning.
Revision 1.7fnielsen 2005/01/26 18:12:24+7 -3
Some changes in relation to missing value problem.
Revision 1.6fnielsen 2003/05/26 11:22:00+2 -2
Bugfix in connectionist with copying of columns field.
Revision 1.5fnielsen 2003/03/17 15:55:30+8 -7
Bugfix: Did not work for a zero matrix.
Revision 1.4fnielsen 2003/02/27 16:48:55+29 -3
Added the setting of the description field.
Added to the "see also" in the help text.
Revision 1.3fnielsen 2003/02/21 17:55:19+2 -2
Bugfix from last version (wrong scaling of eigenvalues).
Revision 1.2fnielsen 2003/02/20 19:48:04+47 -7
Important change: Now the singular values are returned in a matrix.
Extension of the help text.
Revision 1.1fnielsen 2002/08/16 12:33:23None
Initial version.

Filename: brede_mat_transpose.m
Revision 1.7fnielsen 2005/11/11 13:26:47+7 -2
Added an example to the help text.
Revision 1.6fnielsen 2005/05/31 18:13:31+17 -3
Extended to handle numerical matrix as input.
Revision 1.5fnielsen 2003/03/19 17:19:58+3 -3
Missing semicolon in the end of line.
Revision 1.4fnielsen 2003/02/27 16:43:27+8 -2
Added setting of the description field.
Revision 1.3fnielsen 2003/02/07 17:29:59+3 -3
Bugfix: did not copy all fields.
Revision 1.2fnielsen 2002/02/13 15:05:11+3 -3
Bugfix: Did not copy the fields properly.
Revision 1.1fnielsen 2001/04/30 08:50:29None
Initial version.

Filename: brede_mat_wta.m
Revision 1.7fnielsen 2006/01/31 17:17:44+2 -2
Bugfix: Did not work with numeric matrix input.
Revision 1.6fnielsen 2004/11/18 17:03:27+6 -3
Enabled to handle numerical matrix as input.
Revision 1.5fnielsen 2004/11/18 14:15:01+2 -2
Extended error message.
Revision 1.4fnielsen 2003/03/07 19:59:52+71 -10
Added the dimension property.
Revision 1.3fnielsen 2003/02/26 19:21:53+2 -8
Now copying all fields to output 'mat' structure from input 'mat' structure.
Revision 1.2fnielsen 2003/02/26 10:53:12+13 -2
Added copying of all fields.
Revision 1.1fnielsen 2003/01/29 18:37:38None
Initial version.

Filename: brede_nmf_cost_div.m
Revision 1.2fnielsen 2004/11/05 20:51:34+2 -2
Changed to avoid messages of division by zero.
Revision 1.1fnielsen 2001/01/08 12:48:29None
Initial version.

Filename: brede_nmf_cost_eucl.m
Revision 1.4fn 2006/04/24 15:22:16+2 -2
Error in help text.
Revision 1.3fn 2006/04/24 15:21:39+67 -9
Implemented a version with three input argument.
Revision 1.2fnielsen 2004/09/09 15:42:27+13 -3
Extended to handle NaNs.
Revision 1.1fnielsen 2001/01/08 12:49:15None
Initial version.

Filename: brede_nmf_est.m
Revision 1.29fn 2008/06/17 15:56:16+9 -4
Bugfix: Did not work for zero matrix
Revision 1.28fn 2008/03/19 18:31:14+2 -2
Bugfix: Still problem with infinite value cost function.
Revision 1.27fn 2008/03/19 15:25:46+23 -11
Bugfix: Did not work if the first iteration resulted in an infinite
value for the cost function.
Extended to handle a 'mat' structure as input.
Revision 1.26fn 2008/03/17 17:41:39+16 -16
Changes around conditionals.
Revision 1.25fn 2008/02/28 22:54:44+29 -16
Changes for combatility with Octave.
Revision 1.24fn 2007/07/13 20:22:55+9 -9
Correction in connection with 'info' as string.
Revision 1.23fn 2006/07/20 14:33:06+2 -2
Insured that the denominatorThreshold is equal or larger than realmin.
Revision 1.22fn 2006/04/24 15:23:45+56 -29
Changed to handle sparse matrices.
Changed a the value in the denominator in the Euclidean optimization.
Revision 1.21fnielsen 2006/02/01 17:22:00+27 -13
Changed in when the ToleranceZeroWH is applied in the iteration
(presently every teenth iteration).
Extended the help text.
Revision 1.20fnielsen 2006/01/31 15:17:41+20 -1
Implemented the 'seed' property.
Revision 1.19fnielsen 2005/09/06 18:15:29+21 -5
Implemented the MinCostValue property - presently not in the help text.
Revision 1.18fnielsen 2005/05/31 21:39:32+28 -14
Bugfix for Hinit and Winit.
Changed to normalized the result matrices W and H.
Revision 1.17fnielsen 2005/05/17 17:37:01+3 -2
Correction in help text: W and H were not unitary matrices.
Revision 1.16fnielsen 2005/04/08 16:53:32+5 -5
Bugfix: Did not use MinCostChange stopping criterion correctly for the
divergence cost function.
Revision 1.15fnielsen 2005/03/30 14:19:09+116 -64
Implemented runs for divergence sot function.
Implemented the 'IterationProbe' property.
Revision 1.14fnielsen 2005/01/11 17:30:56+19 -7
Bugfix: Did not work for matrices with NaN elements.
Revision 1.13fnielsen 2004/11/18 17:05:16+11 -3
Bugfix: Did not reintialize the parameters when optimizing with
multiple runs.
Revision 1.12fnielsen 2004/11/16 19:21:56+150 -81
Chances after profiling.
Revision 1.11fnielsen 2004/11/11 21:54:46+4 -1
Added more info messages.
Revision 1.10fnielsen 2004/11/05 20:52:27+27 -9
Implemented a break if minimum function change was not large.
Revision 1.9fnielsen 2004/09/22 15:03:51+6 -5
Changed to handle string as input for 'info' property.
Convergence debug plot now semilogy.
Revision 1.8fnielsen 2004/09/09 16:41:23+18 -4
Extended to try to handle missing values.
Revision 1.7fnielsen 2003/08/18 23:15:54+68 -24
Bugfix: The divergence cost function did not work. Implemented hacks
to make it convergence. It seem still to be rather bad, though it
convergence in most cases.
Revision 1.6fnielsen 2003/08/18 20:57:52+50 -17
Implemented the runs property.
Revision 1.5fnielsen 2003/07/25 17:39:07+14 -6
Changed the plotting.
Revision 1.4fnielsen 2003/01/29 18:36:51+3 -3
Extended to handle empty Hinit and Winit properties.
Revision 1.3fnielsen 2001/04/28 17:48:12+50 -5
Extended with initialization of H and W.
Revision 1.2fnielsen 2001/01/09 11:57:03+1 -2
There was a space to much in the help text.
Revision 1.1fnielsen 2001/01/09 11:56:23None
Initial version.

Filename: brede_opt_cg.m
Revision 1.13fn 2008/03/12 14:34:12+2 -2
Minor change in comment.
Revision 1.12fn 2007/01/09 22:15:21+5 -5
Changed the gradient check.
Changed the fix for numerical division.
Revision 1.11fn 2006/12/19 13:16:57+9 -10
Moved the check for a near-zero gradient.
Revision 1.10fn 2006/10/06 15:27:26+4 -3
Added realmin in denominator to avoid division by zero.
Revision 1.9fn 2006/06/27 15:29:23+12 -10
Changed a warning message.
Revision 1.8fnielsen 2004/09/22 14:26:59+17 -15
Bugfix: Loop break was performed wrongly.
Revision 1.7fnielsen 2004/03/24 18:25:34+9 -5
Excluded some information.
Revision 1.6fnielsen 2003/09/17 18:09:08+26 -10
Implemented the info property.
Changed the warnings and information messages.
Revision 1.5fnielsen 2002/10/18 11:09:33+242 -181
Updated.
Revision 1.4fnielsen 2002/10/17 22:23:39+20 -17
Changed function interface.
Revision 1.3fnielsen 2002/10/09 17:37:08+9 -4
Small changes.
Revision 1.2fnielsen 2002/09/27 15:44:58+54 -35
Updated.
Revision 1.1fnielsen 2002/09/24 15:33:21None
Working draft version.

Filename: brede_opt_gradient.m
Revision 1.1fnielsen 2003/09/17 17:05:28None
Initial version.

Filename: brede_pde.m
Revision 1.1fn 2007/07/12 23:10:50None
Initial version.

Filename: brede_pde_binmix.m
Revision 1.7fn 2007/09/21 16:19:57+4 -5
Changed the info display format.
Revision 1.6fn 2007/09/21 15:57:33+21 -9
Implemented the info property.
Correction in help text example.
Changed info display format.
Revision 1.5fnielsen 2004/03/04 17:10:52+37 -15
Bugfix: Did not estimate the Yerushalmy correctly.
Revision 1.4fnielsen 2003/10/06 13:31:54+22 -11
Changed the lambda to common.
Revision 1.3fnielsen 2003/09/22 15:31:37+131 -80
Added some code for common lambda.
Revision 1.2fnielsen 2003/09/18 15:24:03+18 -9
Added permutation of P1 and P2 so P1 is lowest.
Revision 1.1fnielsen 2003/09/17 18:07:28None
Initial version.

Filename: brede_pde_binmix_der.m
Revision 1.1fnielsen 2003/09/17 18:07:42None
Initial version.

Filename: brede_pde_binmix_ll.m
Revision 1.2fnielsen 2003/09/17 18:08:05+16 -1
Added the normalization constant.
Revision 1.1fnielsen 2003/09/16 23:58:02None
Initial draft.

Filename: brede_pde_specht.m
Revision 1.2fn 2007/07/12 23:11:17+3 -2
Adjustments in the help text.
Revision 1.1fnielsen 2000/04/22 00:09:09None
Initial version.

Filename: brede_pde_spechtest.m
Revision 1.5fnielsen 2002/08/16 12:52:43+11 -4
Workaround for numerical problems.
Revision 1.4fnielsen 2002/05/26 18:31:46+9 -10
Changed the initial value of sigma to 10000, - a more suitable value
for the data involved.
Revision 1.3fnielsen 2000/05/16 11:29:08+54 -17
Implemented the properties: iterations and callback.
Revision 1.2fnielsen 2000/04/27 21:37:13+4 -4
Bugfix: Variable name.
Revision 1.1fnielsen 2000/04/21 23:25:14None
Initial version from Lars Kai Hansen.

Filename: brede_pde_spechtlp.m
Revision 1.4fnielsen 2000/05/26 13:07:15+6 -2
Changed to handle one dimensional data.
Revision 1.3fnielsen 2000/05/15 09:32:15+10 -7
Bugfix: Did not work when there was only one point in X0.
Revision 1.2fnielsen 2000/04/27 23:06:29+6 -4
Minor nuisance: The function printed a value on the command-line.
Revision 1.1fnielsen 2000/04/21 23:43:25None
Initial version from Lars Kai Hansen's "doneval".

Filename: brede_pdf_bin.m
Revision 1.2fnielsen 2003/10/06 15:28:01+10 -3
Extended the help text.
Revision 1.1fnielsen 2003/03/04 23:16:43None
Initial version. Taken from lyngby_pdf_bin.

Filename: brede_pdf_binmix.m
Revision 1.1fnielsen 2003/10/06 15:38:41None
Initial draft version.

Filename: brede_pdf_cauchy.m
Revision 1.3fn 2007/07/12 14:32:26+2 -2
Correction in help text: Helpwin did not work.
Revision 1.2fnielsen 2002/10/31 12:08:06+6 -4
Correction in help text.
Revision 1.1fnielsen 2000/10/23 14:47:37None
Initial checkin.

Filename: brede_pdf_chi2.m
Revision 1.1fnielsen 2002/02/06 13:46:51None
Initial version.

Filename: brede_pdf_gauss.m
Revision 1.1fnielsen 2004/10/12 11:25:19None
Initial version.

Filename: brede_pdf_gaussianratio.m
Revision 1.3fn 2008/05/29 21:21:52+75 -75
Indentation of code.
Revision 1.2fn 2007/02/19 18:16:39+57 -21
Added implementation with confluent hypergeometric function.
Revision 1.1fn 2007/02/16 18:19:45None
Initial version: It is not thoroughly checked but beleived to be correct.

Filename: brede_pdf_hypergeo.m
Revision 1.2fnielsen 2003/08/15 14:09:57+30 -5
Implemented the real hypergeometric distribution, - disabled the
binomial approximation.
Revision 1.1fnielsen 2003/03/05 00:44:49None
Initial version.

Filename: brede_pdf_nig.m
Revision 1.1fnielsen 2004/10/26 22:56:48None
Demonstration version.

Filename: brede_pdf_t.m
Revision 1.3fnielsen 2004/10/12 23:14:55+6 -1
Small extension of help text.
Revision 1.2fnielsen 2004/10/12 11:24:59+46 -22
Bugfix/extension: Changed to cope with very large degrees of freedom
by calls to brede_pdf_gauss.
Revision 1.1fnielsen 2000/07/28 19:27:02None
Checkin - though not fully tested.

Filename: brede_per.m
Revision 1.1fn 2007/03/12 11:51:58None
Initial version.

Filename: brede_per_per2html.m
Revision 1.11fn 2006/11/30 15:19:44+10 -5
Added construction of link to NeuroTree.
Revision 1.10fnielsen 2004/09/22 16:38:56+7 -6
Changed the generation of PNG files.
Revision 1.9fnielsen 2004/09/21 16:44:00+30 -12
Implemented Info property.
Changed default directory bar.
Changes in size of generated PNG files.
Revision 1.8fnielsen 2004/07/09 18:17:58+4 -2
Added DirectoryBar to the help text.
Revision 1.7fnielsen 2004/04/05 15:39:51+9 -7
Resolved merging conflict.
Revision 1.6fnielsen 2004/04/05 15:22:40+35 -16
Generation of bullseye plot.
Revision 1.5fnielsen 2004/03/31 17:38:07+15 -6
Minor changes.
Revision 1.4fnielsen 2004/02/12 19:43:48+30 -6
Now writes affiliation
Made the figure invisible during the construction of images.
Now making linkrel URLs.
Revision 1.3fnielsen 2003/08/05 11:04:18+20 -4
Added construction of coauthors.
Revision 1.2fnielsen 2003/05/13 15:13:18+169 -5
Initial version.
Revision 1.1fnielsen 2003/04/11 16:41:50None
Initial draft.

Filename: brede_plot.m
Revision 1.1fn 2008/04/09 15:48:14None
Initial version.

Filename: brede_plot_set_fontsize.m
Revision 1.2fn 2008/07/14 09:10:51+31 -22
Added checking of input arguments.
Revision 1.1fnielsen 2003/12/18 13:14:46None
Initial version.

Filename: brede_plot_wordfreq.m
Revision 1.3fn 2008/03/12 13:21:48+5 -2
Adjustment of help text.
Revision 1.2fnielsen 1999/05/07 16:45:55+3 -2
Problems with aliasing in connection with bar-plot: changed to plot.
Revision 1.1fnielsen 1999/05/07 12:18:18None
Initial version

Filename: brede_plot_wordsvd.m
Revision 1.2fn 2008/03/12 13:24:27+4 -2
Adjustment in help text.
Revision 1.1fnielsen 1999/05/07 16:45:10None
Initial version

Filename: brede_re_match.m
Revision 1.2fnielsen 2000/09/26 16:20:53+68 -17
Added option for bredx_re_match.
Revision 1.1fnielsen 2000/09/26 13:33:58None
Initial version.

Filename: brede_read.m
Revision 1.13fn 2009/03/18 22:22:25+7 -2
Added brede_read_bm_ent.
Revision 1.12fn 2008/11/21 17:51:42+40 -29
Added brede_read_spm_designmatrix.
Revision 1.11fn 2008/06/11 10:48:35+3 -2
Added brede_read_xls2cel.
Revision 1.10fn 2007/06/27 18:43:59+14 -3
Extended with CSV files.
Revision 1.9fn 2007/06/07 16:55:02+25 -1
Turned into a function that will try to open a file.
Revision 1.8fnielsen 2006/01/26 19:37:46+5 -4
Added brede_read_bibtex.
Revision 1.7fnielsen 2005/10/05 13:12:45+5 -3
Added brede_read_xml2vol.
Revision 1.6fnielsen 2005/07/04 15:59:30+4 -2
Added a function.
Revision 1.5fnielsen 2005/06/27 20:21:29+3 -2
Added brede_read_amat.
Revision 1.4fnielsen 2005/04/08 21:02:58+6 -3
Added functions.
Revision 1.3fnielsen 2004/10/01 10:07:11+4 -2
Added brede_read_csv2loc.
Revision 1.2fnielsen 2004/02/11 18:05:03+5 -2
Added functions.
Revision 1.1fnielsen 2003/11/28 15:33:49None
Initial version.

Filename: brede_read_air.m
Revision 1.3fn 2007/06/07 17:22:53+240 -80
Changed to use ordinary AIR16 file format rather than Claus Svarer's
type.
Added the 'endian' and 'type' properties.
Revision 1.2fnielsen 2005/07/01 19:51:15+47 -8
Changed how the tDim information is read in.
Extended to read more of the AIR fields.
Revision 1.1fnielsen 2005/04/06 16:06:41None
Initial version.

Filename: brede_read_amat.m
Revision 1.1fnielsen 2005/06/27 20:28:49None
Initial version.

Filename: brede_read_analyze.m
Revision 1.26fn 2007/10/25 14:57:39+12 -5
Bugfix/extension: the rank field (first element in dimension) seems to
have been redefined in SPM5.
Revision 1.25fn 2007/10/25 14:41:37+554 -554
New indentation of code.
Revision 1.24fn 2007/09/24 13:51:03+5 -2
Added a check for the correct reading of the first byte.
Revision 1.23fn 2006/10/05 15:29:33+28 -2
Implemented more 'info' messages.
Revision 1.22fnielsen 2005/02/03 11:24:00+36 -5
Extended to handle SPM2 written ANALYZE files.
Revision 1.21fnielsen 2004/09/24 16:17:09+22 -2
Implemented the info property.
Revision 1.20fnielsen 2004/09/15 17:00:09+390 -301
Implemented the output of multiple files.
Revision 1.19fnielsen 2004/08/24 16:28:00+5 -2
Added to help text.
Revision 1.18fnielsen 2004/08/24 15:15:14+12 -1
Implemented the origin property.
Revision 1.17fnielsen 2004/05/04 15:03:30+3 -2
Added the scale property to the help text.
Revision 1.16fnielsen 2003/11/27 23:58:19+2 -2
Bugfix: Did not work if output was endian.
Revision 1.15fnielsen 2002/11/18 17:23:26+2 -2
Bugfix: Wrong handling of little endian datatype.
Revision 1.14fnielsen 2002/10/30 15:44:16+4 -3
Bugfix: 'Scale' hidden property was not read properly.
Revision 1.13fnielsen 2002/10/23 18:50:02+51 -71
Changed code around endian.
Revision 1.12fnielsen 2002/08/14 11:23:17+8 -6
Wrong text in the header: The default orientation was lrpais not rlpais.
Revision 1.11fnielsen 2002/07/17 16:45:25+4 -5
Changed the test with the 'regular' field to cope with mricro ANALYZE files.
Revision 1.10fnielsen 2002/03/04 16:42:48+16 -1
Mirrored the origin with the orientation was mirrored.
Warning: this does not seem to work yet.
Added 'vol' to the type field.
Revision 1.9fnielsen 2002/03/01 16:23:58+28 -23
(bugfix) Now also permuting the size and voxelsize and the x, y, z values.
Revision 1.8fnielsen 2002/02/08 15:40:06+3 -3
Annotated code.
Revision 1.7fnielsen 2001/07/20 12:08:34+6 -3
Changed to be able to return 2D ANALYZE files.
Revision 1.6fnielsen 2001/04/09 01:35:47+13 -2
Added more to help text
Revision 1.5fnielsen 2000/11/23 22:13:51+43 -19
Implemented the Filenamehdr property.
Revision 1.4fnielsen 2000/07/25 11:08:15+6 -9
Added the 'filename' field in the returned structure.
Now able to return the 'header' and 'origin'.
Revision 1.3fnielsen 2000/04/23 04:33:36+32 -31
Extended to return a volume structure.
Revision 1.2fnielsen 1999/10/08 14:55:32+4 -3
Changed the left-right orientation from ANALYZE to SPM-ANALYZE ie. left-to-right.
Revision 1.1fnielsen 1999/10/04 11:32:14None
Initial version

Filename: brede_read_analyze4d.m
Revision 1.2fn 2009/10/15 10:57:47+19 -14
Bugfix: Did not work for 'volumes' output.
Now also able to return structure with output='vols'
Revision 1.1fn 2007/07/24 15:53:46None
Initial version.

Filename: brede_read_bibtex.m
Revision 1.1fnielsen 2006/01/26 19:38:46None
Initial version.

Filename: brede_read_bm_ent.m
Revision 1.2fn 2009/04/22 13:04:35+50 -9
Added the output property.
Revision 1.1fn 2009/03/18 22:17:23None
Initial version.

Filename: brede_read_csv2cel.m
Revision 1.4fn 2008/06/12 17:02:03+19 -3
Implemented the 'ColumnHead' property.
Revision 1.3fn 2008/06/05 19:40:52+9 -8
Correction in help text.
Revision 1.2fn 2008/01/29 12:24:51+4 -4
Bugfix: Wrong setting of description field
Bugfix: Transpose of column header.
Revision 1.1fn 2008/01/29 12:18:30None
Initial version.

Filename: brede_read_csv2loc.m
Revision 1.5fn 2007/06/13 15:43:36+11 -3
Added reading of 'description'.
Bugfix: Could not read csv files properly when they had whitespace
between items.
Revision 1.4fnielsen 2005/02/04 17:55:43+33 -27
Bugfix in connection with previous bugfix.
Revision 1.3fnielsen 2004/10/01 14:41:56+46 -13
Extended to read more fields.
Bugfix: Did not work correctly at ends of lines
Extended with 'auto' for 'separator' property.
Revision 1.2fnielsen 2004/09/22 17:40:46+86 -15
Extended with separator and xyzType properties.
Revision 1.1fnielsen 2002/07/28 21:44:15None
Initial version.

Filename: brede_read_csv2mat.m
Revision 1.10fn 2008/06/05 19:00:15+2 -2
Typo in help text.
Revision 1.9fn 2008/06/05 18:45:53+36 -3
Implemented the ColumnHead property
Extended the help text.
Revision 1.8fn 2008/06/05 18:15:38+48 -8
Implemented the 'DecimalSeparator' and now errors if the decimal point
in the file does not fit with the specified decimal point.
Revision 1.7fn 2008/06/05 17:34:35+22 -3
Added the 'info' property.
Revision 1.6fn 2007/10/08 17:02:05+22 -10
Added the rowhead property.
Revision 1.5fn 2006/08/09 17:04:37+5 -2
Added to the help text.
Revision 1.4fnielsen 2005/08/26 14:27:59+28 -4
Implemented the 'delimiter' property.
Revision 1.3fnielsen 2005/08/26 12:36:52+33 -28
Fixed problem with empty files.
Revision 1.2fnielsen 2005/07/13 15:19:54+2 -2
Changed to return the 'rows' as cell of string rather than cell of
cell of strings.
Revision 1.1fnielsen 2004/11/11 21:54:20None
Initial version.

Filename: brede_read_guessfiletype.m
Revision 1.3fn 2008/03/17 11:06:01+20 -20
Code indentation.
Revision 1.2fn 2008/02/19 19:21:17+55 -13
Added functionality to guess analyze/nifti1 for hdr/img files.
Revision 1.1fn 2007/10/31 18:38:19None
Initial draft.

Filename: brede_read_nifti1.m
Revision 1.5fn 2008/06/30 17:21:43+11 -2
Extended to set the origin field.
Revision 1.4fn 2008/06/17 15:42:51+2 -2
Changed 'draft' to more descriptive note.
Revision 1.3fn 2008/06/13 14:20:33+10 -7
Bugfix: Did not work if s-matrix was almost zero.
Revision 1.2fn 2007/11/01 19:31:36+8 -8
Corrections in help text and code annotation.
Revision 1.1fn 2007/10/31 18:30:06None
Initial draft version.

Filename: brede_read_obj.m
Revision 1.1fn 2009/10/06 22:07:07None
Initial version.

Filename: brede_read_off.m
Revision 1.3fnielsen 2004/12/05 16:57:54+81 -34
Extended to partially support Binary OFF files.
Revision 1.2fnielsen 2003/11/25 15:40:46+81 -18
Change in functional interface: Now returns a 'sur' structure instead
of a patch.
Extended to be able to read files without normals and with colorspec.
Revision 1.1fnielsen 2000/09/01 11:32:29None
Initial version.

Filename: brede_read_rawicbm.m
Revision 1.1fnielsen 2001/05/14 08:30:16None
Initial version

Filename: brede_read_spm_designmatrix.m
Revision 1.1fn 2008/11/21 17:51:05None
Initial version.

Filename: brede_read_spm_eegtemplate.m
Revision 1.3fn 2007/07/12 14:03:28+8 -3
Bugfix: Type property did not work.
Now returns the filename of the file read.
Revision 1.2fn 2007/06/12 16:44:49+26 -6
Bugfix: Did not load 'head2' correctly.
Revision 1.1fn 2007/06/11 16:57:55None
Initial version.

Filename: brede_read_spm_gray.m
Revision 1.1fnielsen 2005/09/22 16:35:37None
Initial version.

Filename: brede_read_spm_mat.m
Revision 1.1fnielsen 2005/04/08 21:02:44None
Initial version.

Filename: brede_read_spm_sn_affine.m
Revision 1.1fnielsen 2005/07/04 14:35:17None
Initial version.

Filename: brede_read_txtlines.m
Revision 1.15fn 2008/05/15 09:53:50+138 -29
Added the method and info properties.
Revision 1.14fn 2008/05/15 08:22:32+87 -85
Code indentation
Revision 1.13fn 2007/09/21 15:48:49+2 -2
Type in code annotation.
Revision 1.12fn 2007/08/10 14:07:31+56 -27
Bugfix: Did not return correctly with a single line containing no line
shift character.
Internal code changes so now the fgetl function is used.
Revision 1.11fnielsen 2005/08/26 12:39:31+6 -1
Extendede to read files generated on mac.
Revision 1.10fnielsen 2004/04/06 17:05:07+23 -20
Bugfix: Could not handle empty files.
Revision 1.9fnielsen 2002/11/15 18:35:06+34 -19
Added Process property
Hide Brede path.
Revision 1.8fnielsen 2002/09/13 12:27:54+4 -3
Bugfix: Did not read lines correctly in DOC/Windows due to \r.
Revision 1.7fnielsen 2002/02/13 16:09:24+4 -2
Changed the header text slightly.
Revision 1.6fnielsen 2000/06/28 16:19:57+2 -1
Bugfix: Did not read first line.
Revision 1.5fnielsen 2000/06/27 15:36:59+8 -2
Made it more efficient.
Revision 1.4fnielsen 2000/04/06 18:47:32+2 -2
Bugfix: pathbrede property was not default initialized.
Revision 1.3fnielsen 1999/04/23 11:56:24+15 -11
Implemented pathbrede property.
Revision 1.2fnielsen 1999/01/27 14:53:48+2 -3
Wrong function synopsis.
Revision 1.1fnielsen 1998/11/16 13:39:14None
Initial version

Filename: brede_read_txtmatrix.m
Revision 1.10fn 2008/07/10 13:50:30+41 -5
Implemented the 'SparseIndices' and 'SparseIndices0' types.
Revision 1.9fn 2008/05/14 14:53:27+74 -10
Implementation of sparseindices0
Revision 1.8fn 2008/04/24 17:38:06+112 -112
Code indentation.
Revision 1.7fn 2008/03/17 13:21:21+17 -3
Changed display of running information.
Extended help text.
Revision 1.6fn 2006/04/07 16:35:52+88 -8
Implemented the 'loadMethod' and 'Info' properties.
Revision 1.5fnielsen 2003/03/05 02:22:59+14 -3
Extended to handle cases where there are no rows or columns file.
Now sets the description field.
Revision 1.4fnielsen 2002/11/01 16:03:08+7 -2
Added a check for property.
Revision 1.3fnielsen 2002/09/12 10:10:40+46 -4
Extended to read files with user specified filename prefix.
Revision 1.2fnielsen 2002/06/14 15:40:31+6 -5
Added reading of a columns file.
Revision 1.1fnielsen 2002/02/13 16:08:39None
Initial version.

Filename: brede_read_txttable.m
Revision 1.4fnielsen 2005/08/26 12:37:10+5 -2
Fixed problem with empty files.
Revision 1.3fnielsen 2004/09/07 19:05:16+41 -7
Edited to handle empty lines.
Revision 1.2fnielsen 2004/08/06 12:07:27+3 -3
Change: does not convert to array from cell now.
Revision 1.1fnielsen 2004/02/11 18:05:30None
Initial version.

Filename: brede_read_vapet3d.m
Revision 1.1fnielsen 2004/09/21 16:01:14None
Initial version.

Filename: brede_read_volumes.m
Revision 1.8fn 2008/02/19 19:18:43+22 -7
Implemented guessing of filetype.
Revision 1.7fn 2007/10/31 18:37:07+26 -5
Implemented the 'Filetype' property.
Revision 1.6fnielsen 2005/10/20 16:05:27+56 -10
Extended with the 'description' and 'VolumeMask' property.
Revision 1.5fnielsen 2005/08/19 12:32:24+19 -7
Implemented possibility to use file with filenames as input.
Revision 1.4fnielsen 2005/08/18 18:36:34+2 -2
Bugfix: Did not work with 'output' property as 'vol'.
Revision 1.3fnielsen 2005/08/18 18:26:50+2 -2
Bugfix: Did not work if 'output' property was 'vol'.
Revision 1.2fnielsen 2004/04/27 14:24:57+5 -5
Small language correction in help text.
Revision 1.1fnielsen 2003/11/28 15:30:55None
Initial version.

Filename: brede_read_xls2cel.m
Revision 1.1fn 2008/06/11 10:47:31None
Initial version.

Filename: brede_read_xml.m
Revision 1.9fn 2006/06/22 10:32:13+3 -3
Correction of error message.
Revision 1.8fnielsen 2004/10/13 21:45:26+4 -2
Now deescapes HTML.
Revision 1.7fnielsen 2004/05/18 14:19:21+12 -3
Changed for 'CollapseSecond' such that only the field with a name similar
to the root node is returned.
Revision 1.6fnielsen 2003/12/18 00:45:23+3 -2
Extended an error message.
Revision 1.5fnielsen 2002/11/14 13:49:32+99 -60
Added code for regexp reading of XML file. Presently disabled.
Revision 1.4fnielsen 2002/08/22 12:44:42+8 -3
Bugfix: wrong parsing of properties for 'output'.
Extended help text.
Revision 1.3fnielsen 2002/08/05 08:15:25+62 -14
Implemented the 'output' property.
Revision 1.2fnielsen 2002/07/28 21:38:48+30 -15
Extended to handle comment and <? constructs.
Revision 1.1fnielsen 2002/07/22 17:57:00None
Initial version.

Filename: brede_read_xml2vol.m
Revision 1.1fnielsen 2005/10/05 13:15:03None
Initial version.

Filename: brede_read_xml_cocomac.m
Revision 1.4fn 2006/05/26 14:36:03+2 -2
Help text language correction.
Revision 1.3fnielsen 2005/11/08 10:52:33+31 -10
Implemented the info property.
Revision 1.2fnielsen 2005/10/31 18:08:16+49 -83
Extended help text.
Erased some unused internal code.
Revision 1.1fnielsen 2005/10/28 18:51:11None
Initial version.

Filename: brede_roi.m
Revision 1.10fn 2006/09/21 17:50:55+4 -3
Added new function.
Revision 1.9fn 2006/08/29 11:46:41+7 -1
Added functions.
Revision 1.8fnielsen 2006/02/07 19:14:43+6 -3
Added brede_str_str2woroi.
Revision 1.7fnielsen 2005/11/09 13:19:37+7 -4
Added.
Revision 1.6fnielsen 2005/11/08 18:20:42+21 -3
Added brede_ui_roi and brede_ui_rois.
Revision 1.5fnielsen 2005/11/04 17:36:48+3 -2
Added function.
Revision 1.4fnielsen 2005/03/11 16:14:28+4 -2
Added function.
Revision 1.3fnielsen 2004/05/04 22:41:04+7 -5
Updated.
Revision 1.2fnielsen 2004/04/27 17:12:33+7 -2
Added fields.
Revision 1.1fnielsen 2004/03/30 16:29:04None
Initial version.

Filename: brede_roi_roi2html.m
Revision 1.19fn 2006/07/05 15:10:34+23 -3
Added generation of siblings.
Revision 1.18fn 2006/06/21 16:28:26+33 -24
Implemented handling of the ibvdName field.
Revision 1.17fnielsen 2006/02/14 15:32:16+2 -2
Typo in help text.
Revision 1.16fnielsen 2005/10/07 13:04:32+2 -2
Minor code change.
Revision 1.15fnielsen 2005/10/07 09:28:25+16 -6
Changed to generate URL for searching in CoCoMac.
Revision 1.14fnielsen 2005/04/11 14:48:48+9 -3
Change the match for Brodmann area to use the 'brodmann' field in from
the worois database.
Revision 1.13fnielsen 2005/02/15 19:22:45+16 -12
Bugfix: Did not work with structures as input - only cells.
Bugfix: Did not produce correctly sized corner cube plots and text
count plots.
Revision 1.12fnielsen 2004/09/23 16:24:55+14 -4
Changed default info.
Revision 1.11fnielsen 2004/09/09 15:45:51+11 -2
Changed to write out the name when 'output'='summary'.
Revision 1.10fnielsen 2004/09/08 15:21:35+492 -462
Extended with the 'output' property and implemented the 'summary' option.
Revision 1.9fnielsen 2004/08/05 14:22:14+26 -1
Added the writeout of information from the Reference structure and
reference field.
Revision 1.8fnielsen 2004/05/12 16:19:32+74 -12
Now reports the ICBM label.
Extended with text context.
Revision 1.7fnielsen 2004/05/11 19:23:32+11 -1
Extended to construct link to CoCoMac Site.
Revision 1.6fnielsen 2004/05/03 18:40:32+34 -18
Bugfix and extensions.
Revision 1.5fnielsen 2004/04/27 17:11:14+99 -15
Extended with description and summary of Talairach coordinates.
Revision 1.4fnielsen 2004/04/14 19:16:55+96 -9
Added location table and cornercube.
Revision 1.3fnielsen 2004/04/13 11:20:44+34 -13
Added wikipedia link.
Revision 1.2fnielsen 2004/03/31 17:36:49+73 -5
Extended to write new fields.
Revision 1.1fnielsen 2004/03/30 16:26:09None
Initial version.

Filename: brede_roi_roi2html_alpha.m
Revision 1.1fnielsen 2004/05/11 18:32:18None
Initial version.

Filename: brede_roi_roi2html_ham.m
Revision 1.1fnielsen 2004/05/04 22:41:28None
Initial version.

Filename: brede_roi_roi2html_svarer.m
Revision 1.2fn 2006/08/29 11:52:37+6 -6
Change format of reference.
Revision 1.1fn 2006/08/29 11:46:51None
Initial version.

Filename: brede_roi_roi2html_tzour.m
Revision 1.2fn 2006/06/27 15:24:34+28 -1
Added reference both in HTML output and in help text.
Revision 1.1fnielsen 2004/05/12 17:05:31None
Initial version.

Filename: brede_roi_roi2mat.m
Revision 1.7fn 2006/07/05 15:11:05+75 -38
Sibling type implemented.
Revision 1.6fnielsen 2006/02/07 19:16:00+55 -3
Added type=NamesExact.
Revision 1.5fnielsen 2005/12/05 11:44:24+35 -3
Extended with the CoCoMacSite for the type property.
Revision 1.4fnielsen 2005/11/08 18:39:12+1 -2
Minor text adjustment.
Revision 1.3fnielsen 2005/11/08 18:38:54+33 -4
Implemented Waitbar for 'Info' property.
Revision 1.2fnielsen 2005/03/17 12:50:58+137 -28
Extended with the 'Type' property and the 'names' option.
Revision 1.1fnielsen 2004/03/30 16:27:33None
Initial version.

Filename: brede_roi_roi2names.m
Revision 1.7fnielsen 2006/03/06 15:34:00+22 -4
Implemented the 'info' property.
Revision 1.6fnielsen 2006/02/07 19:17:18+19 -19
Changed to load the brain region ontology through brede_bdb.
Revision 1.5fnielsen 2005/10/31 19:21:23+4 -6
Bugfix: Problem with loading the Brain region taxonomy and converting it.
Revision 1.4fnielsen 2005/03/17 12:52:37+3 -3
Added a function to 'see also'.
Revision 1.3fnielsen 2005/03/16 18:01:16+12 -9
Changes to make it faster by introduction of the MROI persistent variable.
Revision 1.2fnielsen 2005/03/11 16:13:39+96 -12
Extended with 'Fields' and 'Nodes' property.
Revision 1.1fnielsen 2005/03/11 10:53:54None
Initial version.

Filename: brede_roi_roi2str.m
Revision 1.3fnielsen 2006/02/07 19:17:58+4 -2
Minor changes in the help text.
Revision 1.2fnielsen 2005/11/09 13:16:31+84 -14
Implemented the 'type' property.
Revision 1.1fnielsen 2004/03/30 16:26:30None
Initial version.

Filename: brede_roi_roi2tex.m
Revision 1.2fnielsen 2004/09/21 18:45:44+65 -10
Implemented the 'type' property.
Revision 1.1fnielsen 2004/09/10 16:57:34None
Initial version.

Filename: brede_roi_tzour2roi.m
Revision 1.1fn 2007/06/13 16:51:37None
Initial version.

Filename: brede_roi_woroi2loc.m
Revision 1.7fn 2006/08/17 10:16:42+10 -7
Bugfix/extension: Didn't work for string and cellstring input.
Revision 1.6fn 2006/05/29 17:36:31+4 -3
Bugfix: Did return wrong array when searching for coordinates among
multiple parent brain regions.
Revision 1.5fn 2006/03/22 17:28:47+15 -5
Added 'allfound' for the 'type' property.
Revision 1.4fnielsen 2006/02/21 18:14:52+87 -54
Changes.
Revision 1.3fnielsen 2005/11/09 15:33:40+17 -31
Changed the way persistent variables are used: now use brede_bdb
Revision 1.2fnielsen 2005/11/08 11:54:36+68 -19
Extended to return location mean if not immediate match.
Revision 1.1fnielsen 2005/10/31 19:24:07None
Initial version

Filename: brede_roi_woroi2roi.m
Revision 1.1fn 2006/09/21 17:50:41None
Initial version.

Filename: brede_spm2_table2loc.m
Revision 1.2fnielsen 2005/06/07 15:44:55+31 -14
Bugfix: Did not work with input argument. Thanks to Susan Ilic for
reporting this error.
Bugfix: Did not read T and F values.
Extended to also set the xReported, yReported and zReported values.
Revision 1.1fnielsen 2003/07/23 20:28:10None
Initial version.

Filename: brede_spm99_table2loc.m
Revision 1.1fnielsen 2002/05/23 14:12:26None
Initial version.

Filename: brede_stereo_anagl.m
Revision 1.4fnielsen 2001/06/25 22:03:29+8 -3
Bugfix in connection with error message.
Revision 1.3fnielsen 2001/06/25 06:43:11+21 -12
Updated
Revision 1.2fnielsen 2000/09/14 17:59:40+2 -2
Error in function synopsis in the help text.
Revision 1.1fnielsen 2000/07/21 20:33:37None
Initial version, - though not working.

Filename: brede_str.m
Revision 1.12fn 2008/07/09 14:21:01+5 -3
Added brede_str_wptemplate2cel.
Revision 1.11fn 2008/03/31 13:43:01+11 -7
Updated.
Revision 1.10fn 2008/03/11 20:46:17+4 -4
Added brede_str_plot_chfr.
Revision 1.9fn 2008/03/11 20:42:12+6 -5
Added brede_str_elimstop.
Revision 1.8fn 2007/07/03 22:59:33+5 -4
Added function.
Revision 1.7fnielsen 2006/02/07 19:15:39+4 -2
Added brede_str_str2woroi function.
Revision 1.6fnielsen 2005/03/17 13:38:53+6 -2
Added two functions to list.
Revision 1.5fnielsen 2003/07/28 16:50:17+2 -1
Added a function.
Revision 1.4fnielsen 2002/09/13 19:50:07+2 -2
Minor text alignment.
Revision 1.3fnielsen 2002/09/12 09:44:39+27 -31
Updated.
Revision 1.2fnielsen 2002/03/07 14:36:37+4 -2
Added brede_str_ps2txt.
Revision 1.1fnielsen 2001/05/21 14:00:05None
Initial version.

Filename: brede_str_author2author.m
Revision 1.9fnielsen 2005/06/27 20:30:05+24 -8
Extended to handle cellstrings as input.
Revision 1.8fnielsen 2004/07/09 13:54:58+29 -6
Extended with the 'AU' option for the 'form' property.
Revision 1.7fnielsen 2002/08/16 11:56:08+6 -5
Bugfix for empty keynames and initials.
Revision 1.6fnielsen 2002/08/08 12:09:53+7 -1
Bugfix: If the MEDLINE format only contained the initial for the first
name a dot was not added.
Revision 1.5fnielsen 2002/07/23 16:37:22+48 -23
Extended to parse MEDLINE names.
Revision 1.4fnielsen 2001/06/19 10:28:54+51 -5
Added the 'One' to 'Form property: Ability to interprete a single author.
Revision 1.3fnielsen 2001/04/28 17:56:35+80 -41
Extended with 'Form' property.
Revision 1.2fnielsen 2000/12/08 12:01:33+3 -3
Bugfix in connection with names containing 'and' eg. Roland.
Revision 1.1fnielsen 2000/12/06 11:37:57None
Initial version
Does only parse one form of author list.

Filename: brede_str_charfrq.m
Revision 1.4fnielsen 2002/11/08 16:40:05+4 -2
Updated help text.
Revision 1.3fnielsen 1998/10/15 09:40:40+12 -3
Sorted out merging problem
Revision 1.2fnielsen 1998/10/15 09:36:00+60 -7
Implemented absolute and relative frequency.
Revision 1.1fnielsen 1998/10/12 16:41:07None
Initial version

Filename: brede_str_clean.m
Revision 1.3fnielsen 2001/01/24 01:44:04+2 -2
Bugfix.
Revision 1.2fnielsen 2001/01/24 01:14:16+13 -12
Added deblanking.
Revision 1.1fnielsen 2001/01/18 11:21:56None
Initial version.

Filename: brede_str_date.m
Revision 1.1fn 2006/08/10 11:22:25None
Initial version.

Filename: brede_str_deblank.m
Revision 1.1fn 2008/03/28 11:43:48None
Initial version.

Filename: brede_str_dehtml.m
Revision 1.9fnielsen 2004/02/03 11:52:07+8 -1
Now ignores text before <body> (typically javascript)
Revision 1.8fnielsen 2003/03/07 19:58:46+33 -5
Extended with info property.
Revision 1.7fnielsen 2003/02/20 17:41:13+174 -96
Extended to remove comments.
Revision 1.6fnielsen 2001/05/13 10:42:50+3 -3
Bugfix: Did not remove '/' tags.
Revision 1.5fnielsen 2001/04/28 17:51:44+7 -3
Changes!?
Revision 1.4fnielsen 2001/02/11 22:59:44+5 -2
Bugfix: debugging command not erased!
Implemented handling of '&lt;' and '&gt;'
Revision 1.3fnielsen 2001/02/05 22:18:41+108 -36
Added the ability to translate &...; codes.
Revision 1.2fnielsen 2001/01/17 17:21:41+34 -2
Added removal of &nbsp;
Revision 1.1fnielsen 2001/01/17 14:21:37None
Initial version: Should be extended to cope with p < 0.05 for example.

Filename: brede_str_elimstop.m
Revision 1.4fn 2008/03/11 20:41:57+10 -2
Adjustment help in the help text.
Revision 1.3fnielsen 1999/05/07 16:47:44+10 -2
Extended to elimenate words that only accures once.
Revision 1.2fnielsen 1999/05/06 12:50:25+36 -13
Changed to handle hashing with buckets.
Revision 1.1fnielsen 1999/04/23 11:55:45None
Initial version

Filename: brede_str_erase.m
Revision 1.1fnielsen 2001/01/22 16:01:10None
Initial version.

Filename: brede_str_google2urls.m
Revision 1.1fnielsen 2003/02/11 21:28:56None
Initial version.

Filename: brede_str_html2str.m
Revision 1.1fnielsen 2004/10/13 21:46:14None
Initial version.

Filename: brede_str_lix.m
Revision 1.3fn 2008/03/11 21:42:38+102 -75
Major bugfix: Did not work before. Corrected.
Extension of help text.
Revision 1.2fnielsen 1999/04/23 11:57:54+2 -2
Error in help text.
Revision 1.1fnielsen 1999/04/08 11:53:50None
Draft version

Filename: brede_str_ngram.m
Revision 1.5fn 2007/08/10 15:34:32+2 -2
Added functions to 'see also'
Revision 1.4fn 2007/07/03 20:59:10+148 -52
Major cleanup and major bugfix: Did not count the correct number of
occurence of N-grams and only resulted the binary value - either 0 or
1. Removed the 'freq' property. Changed the functional interface so
the default is now to return a 'mat' structure. Extended with the
'info' property. Extended help text with an example.
Revision 1.3fnielsen 1999/04/16 17:24:10+20 -13
Bugfix: Constructed the N-grams wrongly.
Revision 1.2fnielsen 1999/04/15 11:56:17+16 -18
First workig version
Revision 1.1fnielsen 1999/04/08 11:53:38None
Draft version

Filename: brede_str_pdf2txt.m
Revision 1.2fnielsen 2003/07/08 15:31:39+34 -21
Changed default property: Now returning a string.
Revision 1.1fnielsen 2002/11/15 18:34:35None
Initial version.

Filename: brede_str_phrasefrq.m
Revision 1.2fnielsen 2005/03/17 13:39:17+4 -3
Added function to 'see also'.
Revision 1.1fnielsen 2002/11/08 16:39:22None
Initial version.

Filename: brede_str_plot_chfr.m
Revision 1.2fn 2008/03/11 20:44:49+7 -3
Adjustment in the help text.
Revision 1.1fnielsen 1998/10/12 19:19:14None
Initial version

Filename: brede_str_plot_phrasefrq.m
Revision 1.2fnielsen 2005/03/17 14:22:39+14 -2
Extended help text with a large example.
Revision 1.1fnielsen 2005/03/17 13:36:19None
Initial version.

Filename: brede_str_ps2txt.m
Revision 1.4fnielsen 2003/07/08 15:29:49+4 -3
Extended help text.
Revision 1.3fnielsen 2002/11/15 18:37:22+3 -1
Added function synopsis in help text.
Revision 1.2fnielsen 2002/03/07 14:35:51+24 -13
Added PDF translation with pdftotext.
Revision 1.1fnielsen 2002/03/07 14:11:08None
Initial version.

Filename: brede_str_split.m
Revision 1.3fnielsen 2004/05/12 17:05:01+40 -14
Extended to handle cellstrings as input.
Revision 1.2fnielsen 2001/04/08 21:00:56+3 -3
Bugfix.
Revision 1.1fnielsen 2001/04/08 20:21:57None
Initial version.

Filename: brede_str_splitkey.m
Revision 1.3fn 2008/03/12 12:33:26+6 -2
Adjustment of help text.
Revision 1.2fnielsen 1999/05/07 16:46:43+9 -4
Extended to eliminate words that only occures once.
Revision 1.1fnielsen 1999/05/07 09:58:01None
Initial version

Filename: brede_str_splitword.m
Revision 1.4fnielsen 2001/04/28 17:59:12+63 -8
Changed implementation.
Revision 1.3fnielsen 1999/05/06 12:50:58+22 -5
Changed to handle hashing with buckets.
Revision 1.2fnielsen 1999/04/20 11:03:55+88 -12
Implemented hash matrix.
Revision 1.1fnielsen 1999/04/16 17:26:10None
Initial version

Filename: brede_str_str2alphanum.m
Revision 1.2fnielsen 2003/07/29 15:08:09+7 -1
Extended help text.
Revision 1.1fnielsen 2003/07/28 16:50:10None
Initial version.

Filename: brede_str_str2bib.m
Revision 1.1fnielsen 2003/07/08 15:36:45None
Draft version.

Filename: brede_str_str2html.m
Revision 1.4fnielsen 2004/10/13 21:45:57+55 -44
Changed to use strrep Matlab function.
Revision 1.3fnielsen 2003/05/13 15:14:13+14 -2
Extended to convert qoutation mark.
Revision 1.2fnielsen 2003/04/14 15:18:55+14 -2
Extended to handle the ampersand character.
Revision 1.1fnielsen 2003/01/16 19:42:36None
Initial version.

Filename: brede_str_str2mat.m
Revision 1.9fn 2007/07/03 22:58:41+12 -3
Extended messages in connection with 'info' property.
Revision 1.8fnielsen 2004/10/08 09:36:19+3 -3
Changed default info property.
Revision 1.7fnielsen 2004/08/05 14:07:38+11 -11
Bugfix: Did not read the argument with the 'info' property correctly
when it was a number.
Revision 1.6fnielsen 2004/02/10 15:56:53+2 -2
Spelling error in description field.
Revision 1.5fnielsen 2004/01/30 19:42:29+6 -3
Added type and description to return argument.
Revision 1.4fnielsen 2003/03/07 20:03:21+3 -2
Extended the see also field.
Revision 1.3fnielsen 2003/02/21 19:22:17+20 -14
Changed to return absolute frequency rather than binary elements.
Revision 1.2fnielsen 2001/05/13 12:42:43+62 -8
Implementation via hash
Disabled stop words (hash version does not work).
Revision 1.1fnielsen 2001/02/07 21:27:05None
Initial version.

Filename: brede_str_str2mat_wordbigram.m
Revision 1.2fn 2007/08/13 18:14:15+25 -1
Added a yet unused property.
Revision 1.1fn 2007/08/10 15:34:14None
Initial version.

Filename: brede_str_str2woroi.m
Revision 1.3fnielsen 2006/02/14 18:09:05+29 -5
Added the info property.
Revision 1.2fnielsen 2006/02/08 19:52:56+20 -13
Implemented with persistent variable to make it faster.
Revision 1.1fnielsen 2006/02/07 19:14:08None
Initial version.

Filename: brede_str_ucfirst.m
Revision 1.1fn 2008/03/28 12:40:31None
Initial version.

Filename: brede_str_wordstem.m
Revision 1.2fnielsen 2005/02/03 20:23:11+89 -52
Exteded with the 's' type of wordstemming.
Revision 1.1fnielsen 2001/01/24 01:16:00None
Initial version.

Filename: brede_str_wptemplate2cel.m
Revision 1.1fn 2008/07/09 14:19:12None
Initial version.

Filename: brede_str_wptemplate2struct.m
Revision 1.3fn 2008/07/09 14:24:41+3 -3
Minor bugfix for 'info' property.
Revision 1.2fn 2008/07/09 14:21:40+3 -2
Added brede_str_wptemplate2cel to 'see also'.
Revision 1.1fn 2008/03/28 18:53:34None
Initial version.

Filename: brede_struct.m
Revision 1.6fn 2007/07/26 16:28:59+5 -4
Added brede_struct_getelement function.
Revision 1.5fnielsen 2004/10/31 10:20:07+10 -2
Added functions.
Revision 1.4fnielsen 2004/10/12 21:54:26+4 -3
Updated.
Revision 1.3fnielsen 2004/10/06 19:23:36+4 -2
Added brede_struct_struct2str.
Revision 1.2fnielsen 2004/10/01 14:42:10+3 -2
Added function.
Revision 1.1fnielsen 2004/10/01 11:06:57None
Initial version.

Filename: brede_struct_array2cell.m
Revision 1.2fn 2007/03/12 13:17:17+5 -1
Bugfix: Did not work for empty input.
Revision 1.1fnielsen 2004/10/01 14:42:22None
Initial version.

Filename: brede_struct_field2cellstr.m
Revision 1.3fnielsen 2006/03/09 17:34:03+4 -2
Bugfix: Did not work properly for empty structures.
Revision 1.2fnielsen 2006/03/09 10:55:04+14 -5
Bugfix: Did work for string input.
Revision 1.1fnielsen 2004/04/27 17:12:09None
Initial version.

Filename: brede_struct_field2num.m
Revision 1.5fn 2009/08/17 13:05:52+2 -2
Bugfix in connection with a field that was not in the structure.
Revision 1.4fn 2007/07/26 18:51:41+3 -1
Extended to handle cell of numbers.
Revision 1.3fnielsen 2004/10/31 23:42:24+35 -7
Added second ingput argument.
Revision 1.2fnielsen 2004/09/10 16:57:24+2 -2
Missing semicolon.
Revision 1.1fnielsen 2004/08/05 17:16:17None
Initial version.

Filename: brede_struct_field2nums.m
Revision 1.2fnielsen 2005/10/05 13:16:04+29 -9
Bugfix/Extension to handle lineshift in cellstrings and multiple
numbers in multiple cellstrings.
Revision 1.1fnielsen 2004/08/05 17:15:43None
Initial version.

Filename: brede_struct_field2str.m
Revision 1.3fnielsen 2005/11/09 13:16:55+2 -2
Correction of error in help text.
Revision 1.2fnielsen 2004/10/31 10:19:49+42 -6
Extended to handle to input arguments.
Revision 1.1fnielsen 2004/09/15 17:01:49None
Initial version.

Filename: brede_struct_fieldnames.m
Revision 1.1fnielsen 2004/10/01 11:05:13None
Initial verison.

Filename: brede_struct_getelement.m
Revision 1.2fn 2007/07/26 18:50:42+2 -2
Minor addition to help text.
Revision 1.1fnielsen 2004/09/08 18:13:36None
Updated.

Filename: brede_struct_guesstype.m
Revision 1.4fn 2009/09/24 16:11:47+4 -1
Extended to return type for struct array.
Revision 1.3fn 2009/04/30 14:42:46+3 -1
Added recognition of 'cel' through 'cell' field.
Revision 1.2fn 2008/03/12 14:54:46+2 -2
Bigfix for octave in conditionals.
Revision 1.1fnielsen 2004/10/12 21:54:19None
Initial version.

Filename: brede_struct_select.m
Revision 1.10fnielsen 2005/06/08 20:23:56+7 -2
Added some code for debug info.
Revision 1.9fnielsen 2005/05/31 21:37:44+9 -6
Extended with strcmpi for where property.
Revision 1.8fnielsen 2004/07/02 00:01:14+7 -2
Bugfix/extension: Now able to return structure as output.
Revision 1.7fnielsen 2004/06/08 10:47:23+4 -3
Bugfix: Did not work when third element in where was a cellstr.
Revision 1.6fnielsen 2004/06/03 15:14:49+3 -1
Implemented the ability to return a cell.
Revision 1.5fnielsen 2004/06/02 19:31:34+10 -6
extended with any(==)
Revision 1.4fnielsen 2004/05/04 14:59:01+2 -2
Bugfix. wrong syntax.
Revision 1.3fnielsen 2004/05/03 19:19:21+32 -25
Made a workaround for version 6.0 of matlab.
Revision 1.2fnielsen 2004/04/14 19:17:53+25 -7
Implemented strfindi and fstrfindi.
Revision 1.1fnielsen 2004/04/01 15:55:56None
Initial version.

Filename: brede_struct_struct2str.m
Revision 1.4fn 2007/03/13 10:34:14+6 -3
Added support for 'ext' structures.
Revision 1.3fnielsen 2005/02/24 13:01:35+13 -3
Extended to handle 'loc' structures.
Revision 1.2fnielsen 2004/11/02 17:59:45+4 -2
Bugfix for type as cellstring
Extended to handle 'bib' structures.
Revision 1.1fnielsen 2004/10/06 19:22:05None
Initial draft version.

Filename: brede_sur.m
Revision 1.12fn 2007/07/13 20:22:15+6 -5
Added the brede_sur_subsurface.
Revision 1.11fn 2007/07/12 23:14:16+15 -9
Now uses the brede_ui_sur function.
Added brede_ui_sur and brede_sur_sur2mat.
Revision 1.10fn 2007/05/24 17:29:36+27 -1
Made to a function that accepts input.
Revision 1.9fn 2006/03/27 10:21:39+2 -2
Erased some erroneous characters.
Revision 1.8fnielsen 2003/12/05 18:16:44+4 -3
Added brede_sur_area.
Revision 1.7fnielsen 2003/12/03 19:19:12+14 -7
Updated.
Revision 1.6fnielsen 2003/11/27 23:58:46+9 -5
Added functions.
Revision 1.5fnielsen 2003/11/27 11:32:14+11 -7
Added function.
Revision 1.4fnielsen 2003/11/26 19:23:57+21 -5
Added functions.
Revision 1.3fnielsen 2003/11/25 16:27:32+3 -2
Added brede_read_off.
Revision 1.2fnielsen 2003/11/24 18:36:08+5 -3
Added function.
Revision 1.1fnielsen 2003/11/21 14:05:32None
Initial version.

Filename: brede_sur_area.m
Revision 1.1fnielsen 2003/12/05 18:18:19None
Initial version.

Filename: brede_sur_color.m
Revision 1.3fnielsen 2003/12/05 18:38:09+3 -3
Bugfix: Did not color some of the vertices.
Revision 1.2fnielsen 2003/12/03 18:53:27+44 -11
Implemented the 'style' property.
Revision 1.1fnielsen 2003/11/29 02:51:53None
Initial version.

Filename: brede_sur_connectivity.m
Revision 1.4fnielsen 2005/10/13 17:47:22+14 -14
Bugfix: Code change since a variable name collided with a function name.
Revision 1.3fnielsen 2003/12/05 18:35:46+6 -6
Bugfix: lower and upper triangular did not work.
Revision 1.2fnielsen 2003/12/05 13:00:29+12 -10
Major bugfix: Did not return all edges.
Revision 1.1fnielsen 2003/11/27 13:34:50None
Initial version.

Filename: brede_sur_convhull.m
Revision 1.2fnielsen 2005/03/11 00:05:13+8 -3
Added functions to 'see also'.
Revision 1.1fnielsen 2003/11/28 17:25:49None
Initial version.

Filename: brede_sur_cube.m
Revision 1.2fnielsen 2003/11/22 17:11:58+43 -8
Extended with size property.
Revision 1.1fnielsen 2003/11/21 13:52:00None
Initial version.

Filename: brede_sur_curvature.m
Revision 1.1fnielsen 2003/11/29 01:41:34None
Initial draft version.

Filename: brede_sur_dist.m
Revision 1.1fnielsen 2003/12/03 19:14:01None
Initial version.

Filename: brede_sur_drury.m
Revision 1.1fnielsen 2003/12/03 18:50:24None
Initial version.

Filename: brede_sur_flatten.m
Revision 1.2fnielsen 2003/12/02 23:15:12+69 -2
Updated.
Revision 1.1fnielsen 2003/12/01 23:39:52None
Updated.

Filename: brede_sur_hulllevel.m
Revision 1.2fnielsen 2005/03/11 00:45:14+22 -3
Extended help text.
Revision 1.1fnielsen 2003/11/29 01:40:30None
Initial version.

Filename: brede_sur_octahedron.m
Revision 1.2fnielsen 2003/11/27 11:32:39+23 -6
Added 'center' property.
Revision 1.1fnielsen 2003/11/26 19:21:40None
Initial version.

Filename: brede_sur_reduce.m
Revision 1.2fnielsen 2003/12/04 15:22:59+26 -2
Bugfix: fraction property was not read.
Revision 1.1fnielsen 2003/12/01 10:07:49None
Initial version.

Filename: brede_sur_refine.m
Revision 1.3fnielsen 2003/11/27 11:59:32+63 -7
Added depth property for iterative refinement.
Revision 1.2fnielsen 2003/11/26 19:24:18+46 -15
Initial working version.
Revision 1.1fnielsen 2003/11/25 16:26:16None
None working draft.

Filename: brede_sur_scalevert.m
Revision 1.1fnielsen 2003/12/03 19:18:10None
Initial version.

Filename: brede_sur_smoothvert.m
Revision 1.5fnielsen 2003/12/05 18:36:48+4 -2
Added to help text.
Revision 1.4fnielsen 2003/12/03 19:12:23+52 -8
Implemented iterations property.
Revision 1.3fnielsen 2003/11/29 01:46:42+6 -2
Now copy the description from the the input argument to the output.
Revision 1.2fnielsen 2003/11/28 16:29:43+2 -2
Missing semicolon.
Revision 1.1fnielsen 2003/11/27 13:49:17None
Initial version.

Filename: brede_sur_sphere.m
Revision 1.1fnielsen 2003/11/26 18:47:08None
Initial version.

Filename: brede_sur_subsurface.m
Revision 1.1fn 2007/07/13 20:20:26None
Initial version.

Filename: brede_sur_sur2mat.m
Revision 1.1fn 2007/07/12 13:11:26None
Initial version.

Filename: brede_sur_tetrahedron.m
Revision 1.1fnielsen 2003/11/25 13:36:10None
Initial version.

Filename: brede_sur_triangularize.m
Revision 1.1fnielsen 2003/11/22 17:20:01None
Initial version.

Filename: brede_sur_unfold.m
Revision 1.3fnielsen 2003/12/05 19:11:50+17 -4
Initial version.
Revision 1.2fnielsen 2003/12/04 17:21:25+142 -18
Draft version.
Revision 1.1fnielsen 2003/12/03 19:17:10None
Initial draft version

Filename: brede_svd_est.m
Revision 1.4fnielsen 2004/04/02 16:28:10+8 -8
Changed to be robust to input with zeros.
Revision 1.3fnielsen 2002/08/16 12:30:47+18 -13
Extended to handle 'Mat' structure.
Revision 1.2fnielsen 2001/04/28 17:23:51+2 -2
Bugfix: Could not handle components=1
Revision 1.1fnielsen 2001/01/25 00:30:27None
Initial version.

Filename: brede_svd_test.m
Revision 1.1fn 2006/07/17 18:13:49None
Initial version.

Filename: brede_ta2.m
Revision 1.5fnielsen 2005/12/05 11:39:20+4 -2
Addede brede_ta2_grid function.
Revision 1.4fnielsen 2005/09/16 10:48:18+22 -1
Made to a function.
Revision 1.3fnielsen 2004/08/05 18:27:37+6 -3
Added functions.
Revision 1.2fnielsen 2003/11/28 14:58:07+2 -2
Spelling correction.
Revision 1.1fnielsen 2003/11/28 14:57:04None
Initial version.

Filename: brede_ta2_axis.m
Revision 1.1fnielsen 2003/09/12 17:27:26None
Initial version.

Filename: brede_ta2_concortex.m
Revision 1.2fnielsen 2005/02/05 18:37:31+17 -3
Implemented the linewidth property.
Revision 1.1fnielsen 2004/08/05 18:38:58None
Initial version.

Filename: brede_ta2_digitize.m
Revision 1.3fnielsen 2003/09/10 20:38:36+4 -22
Bugfix: Used the wrong handle.
Revision 1.2fnielsen 2003/09/10 01:54:32+2 -2
Bugfix in sagittal digitization.
Revision 1.1fnielsen 2003/09/08 17:01:08None
Initial version.

Filename: brede_ta2_frame.m
Revision 1.14fn 2007/07/04 12:08:33+53 -4
Added three SliceLabel properties.
Revision 1.13fn 2007/03/12 10:54:13+8 -5
Bugfix: Now deletes the old axis
Revision 1.12fn 2007/03/12 10:45:30+3 -3
Workaround for a matlab bug/feature in version 7.3.0.298
Revision 1.11fnielsen 2005/12/05 11:40:37+15 -4
Implemented the 'rows' property.
Revision 1.10fnielsen 2005/02/02 15:41:42+3 -3
Bugfix: Did not make proper test for input argument.
Revision 1.9fnielsen 2004/08/05 17:18:05+6 -5
Changed the background property to backgroundcolor to be consistent
with brede_ta3_frame.
Revision 1.8fnielsen 2003/12/05 16:12:28+8 -3
Enable to work with an empty background (color) as input property.
Revision 1.7fnielsen 2003/11/28 15:10:04+28 -21
Disabled the plotting of an anatomical volume from the SPM distribution.
Extended the help text.
Revision 1.6fnielsen 2003/09/10 20:39:04+4 -2
Bugfixes: Did not work for transversal and sagittal.
Revision 1.5fnielsen 2003/09/08 17:01:45+49 -11
Implemented Orthotype property.
Revision 1.4fnielsen 2003/05/21 09:47:18+9 -10
Changed to not render the jerom template.
Fix in an error messages text.
Revision 1.3fnielsen 2003/05/20 15:00:42+43 -8
Added the background property.
Revision 1.2fnielsen 2002/10/17 22:30:45+54 -16
Added space property.
Revision 1.1fnielsen 2002/10/17 11:39:36None
Initial version.

Filename: brede_ta2_grid.m
Revision 1.2fnielsen 2005/12/06 17:38:32+62 -17
Added the 'ticks' for 'linestyle'.
Revision 1.1fnielsen 2005/12/05 11:39:04None
Initial version.

Filename: brede_ta2_loc.m
Revision 1.9fnielsen 2005/02/02 17:03:47+3 -11
Bugfix: Did not plot the coordinates if coordinates represented as
string or cellstrings.
Revision 1.8fnielsen 2004/08/05 19:16:05+2 -2
Bugfix: The brede_ta2_frame was called with a outdated property.
Revision 1.7fnielsen 2004/08/05 15:45:11+23 -9
Added the figurehandle property.
Revision 1.6fnielsen 2003/12/05 16:06:48+25 -12
Implemented the MarkerSize property.
Constructed some empty defaults for backgroundColor, space, slices, orthoType.
Revision 1.5fnielsen 2003/10/06 14:12:24+5 -1
Bugfix: Did not work if the color were not defined.
Revision 1.4fnielsen 2003/09/19 14:08:32+6 -2
Changed the colorField default value to empty.
Revision 1.3fnielsen 2003/09/18 18:22:09+67 -15
Updated with colorField and colormap and markersize.
Revision 1.2fnielsen 2003/09/18 15:42:53+53 -5
Extended with markers and colors.
Revision 1.1fnielsen 2003/09/11 15:22:39None
Initial working draft.

Filename: brede_ta2_vol.m
Revision 1.12fn 2009/07/16 16:24:48+12 -2
Added 'correlation' as colormap
Revision 1.11fn 2007/03/12 13:28:56+4 -5
Bugfix in connection with backgroundcolor.
Revision 1.10fn 2007/03/12 11:18:15+22 -7
Made better automatic setup of background color.
Revision 1.9fnielsen 2005/07/14 16:03:14+8 -5
Bugfix in Backgroundcolor.
Revision 1.8fnielsen 2004/08/05 17:17:11+4 -4
Changed background to backgroundcolor to be consistent with brede_ta3_frame.
Revision 1.7fnielsen 2003/11/28 15:07:48+10 -3
Extended the help text.
Revision 1.6fnielsen 2003/09/12 17:29:31+10 -4
Bugfix: Did not work when the threshold was used.
Revision 1.5fnielsen 2003/09/11 15:22:18+3 -4
Bugfix: Now uses the axis handles from the userdata.
Revision 1.4fnielsen 2003/09/08 17:02:22+31 -13
Implemented slices and orthotype property.
Revision 1.3fnielsen 2003/05/21 15:57:37+23 -2
Added the space property.
Revision 1.2fnielsen 2003/05/20 15:01:12+21 -4
Added the background property.
Revision 1.1fnielsen 2002/10/17 10:09:36None
Initial version.

Filename: brede_ta3.m
Revision 1.4fn 2007/05/24 16:14:18+6 -1
Made to a function that calles brede_ta3_frame.
Revision 1.3fnielsen 2003/11/24 16:41:18+66 -30
Extended the help text with example and see also links.
Revision 1.2fnielsen 2003/07/22 18:44:03+3 -2
Added link to see also.
Revision 1.1fnielsen 2003/07/22 10:56:49None
Initial version.

Filename: brede_ta3_aal.m
Revision 1.2fnielsen 2003/11/24 14:15:14+5 -5
Corrected error in help text example.
Missing semicolon.
Revision 1.1fnielsen 2002/10/23 18:44:59None
Initial version.

Filename: brede_ta3_axes.m
Revision 1.10fnielsen 2003/03/10 18:17:12+148 -77
Added the system property.
Revision 1.9fnielsen 2002/09/18 15:21:57+6 -4
Extended the help text.
Revision 1.8fnielsen 2002/03/08 17:46:59+23 -22
Added thickness, - which should really be thinness.
Revision 1.7fnielsen 2000/10/23 14:45:15+103 -31
Implemented the position property.
Revision 1.6fnielsen 2000/09/06 19:05:12+3 -2
Change the 'See also' to capital letters.
Revision 1.5fnielsen 2000/07/25 11:09:20+29 -1
Added color-handling to the context menu.
Revision 1.4fnielsen 2000/04/27 22:01:26+7 -3
Made the Z-axes higher.
Revision 1.3fnielsen 2000/04/23 04:27:37+40 -44
Extended the context menu.
Widened the axes.
Revision 1.2fnielsen 2000/04/21 05:11:43+18 -10
Contextmenu added.
Revision 1.1fnielsen 2000/04/21 04:27:00None
Initial version.

Filename: brede_ta3_axlabel.m
Revision 1.2fnielsen 2000/09/06 19:04:24+48 -10
Position and FontWeight implemented.
Revision 1.1fnielsen 2000/05/15 20:27:25None
Initial version. Copied from brede_vta_axlabel.

Filename: brede_ta3_bib.m
Revision 1.3fn 2009/05/13 08:12:49+2 -2
Typo.
Revision 1.2fn 2009/03/23 17:49:08+28 -9
Implemented the pointtype and shadowcolor type.
Revision 1.1fnielsen 2003/05/13 15:13:33None
Initial version.

Filename: brede_ta3_brodnum.m
Revision 1.8fnielsen 2003/11/24 15:35:54+11 -8
Small changes in help text.
Revision 1.7fnielsen 2000/11/17 16:01:43+2 -2
Included some more items in the 'see also' part of the help text.
Revision 1.6fnielsen 2000/07/06 19:31:41+2 -2
Spelling error in example code.
Revision 1.5fnielsen 2000/07/06 19:30:49+5 -5
Bugfix: Didnot work with 'Numbers' alone.
Revision 1.4fnielsen 2000/05/26 13:50:35+26 -4
Implemented Zinclude
Revision 1.3fnielsen 2000/05/03 16:03:03+2 -2
Bugfix: Was not able to find the data file on a Windows system.
Revision 1.2fnielsen 2000/04/23 05:25:21+47 -40
Extended with numbers property.
Revision 1.1fnielsen 2000/04/22 02:53:18None
Initial version. Translated from brede_vta_brodnum.

Filename: brede_ta3_concortex.m
Revision 1.7fnielsen 2004/08/05 18:04:41+16 -15
Bugfix: Fixed filename separator so it should work with on other
systems '/'-systems.
Revision 1.6fnielsen 2004/01/23 11:11:53+5 -1
Added more to the example.
Revision 1.5fnielsen 2003/11/24 14:28:48+3 -2
Small correction to the help text.
Revision 1.4fnielsen 2002/12/06 20:21:17+8 -6
Extended help text.
Revision 1.3fnielsen 2000/07/03 18:05:37+29 -6
Updated help text.
Revision 1.2fnielsen 2000/05/29 19:23:35+5 -18
Changed default value of ZInclude property.
Revision 1.1fnielsen 2000/05/26 13:50:51None
Initial version.

Filename: brede_ta3_contour.m
Revision 1.7fnielsen 2003/11/24 16:43:32+6 -7
Small changes in help text.
Revision 1.6fnielsen 2000/10/19 22:42:04+130 -95
Implemented linewidth.
Added funtionality in the popumenu.
Revision 1.5fnielsen 2000/09/25 12:33:34+66 -16
Bugfix: Color did not work for all types of contours.
Extended: with the 'Position' property.
Extended the help text a bit with an example.
Revision 1.4fnielsen 2000/07/06 18:45:42+3 -2
Added some extra to "see also"
Revision 1.3fnielsen 2000/05/26 13:51:43+3 -3
Bugfix in the function header.
Changed the help text.
Revision 1.2fnielsen 2000/04/23 04:32:48+11 -2
Extended with "Push handle"
Revision 1.1fnielsen 2000/04/21 22:03:28None
Initial version.

Filename: brede_ta3_drury.m
Revision 1.6fn 2007/06/12 19:33:14+21 -3
Implemented the alpha property.
Revision 1.5fnielsen 2004/06/02 09:11:49+56 -38
Extended with the hemisphere property.
Revision 1.4fnielsen 2000/09/01 13:57:46+10 -1
Added some extra help text about Heather Drury.
Revision 1.3fnielsen 2000/07/06 18:47:51+5 -3
Bugfix: Change filesep from "/" to filesep.
Revision 1.2fnielsen 2000/04/23 05:44:59+18 -18
Extended a bit: Does not return handle if no output arguments.
Added 'Push handle'.
Revision 1.1fnielsen 2000/04/21 19:41:39None
Initial version

Filename: brede_ta3_exp.m
Revision 1.9fn 2009/09/30 14:18:26+2 -2
Bugfix.
Revision 1.8fn 2009/03/23 17:49:41+34 -45
Implemented the pointtype and shadowcolor type.
Revision 1.7fnielsen 2003/05/13 15:13:53+2 -2
Bugfix in connection with url input.
Revision 1.6fnielsen 2003/01/15 02:34:16+9 -2
Bugfix in arugment checking.
Help text expanded with example.
Revision 1.5fnielsen 2002/09/11 16:26:36+9 -4
Disabled the use of textAbove.
Now using the jet colormap points.
Revision 1.4fnielsen 2002/08/16 12:25:16+16 -5
Resolved merging conflict.
Now also plotting a Vol structure.
Revision 1.3fnielsen 2002/08/15 19:06:08+39 -11
Extended to handle cells
Now iterating over HSV colors
Now using capsuleDescription for textabove.
Revision 1.2fnielsen 2002/06/27 22:13:04+21 -28
Bugfix: Scale did not work
Some of the properties will still not work.
Now constructs a url from the BrainMap identifiers.
Revision 1.1fnielsen 2002/01/03 17:44:08None
Initial version.

Filename: brede_ta3_eyes.m
Revision 1.3fnielsen 2003/11/24 14:25:13+6 -8
Corrected help text.
Revision 1.2fnielsen 2000/10/10 22:57:15+2 -2
Bugfix: The help called the wrong function.
Revision 1.1fnielsen 2000/07/05 22:47:09None
Initial version.

Filename: brede_ta3_frame.m
Revision 1.27fn 2009/03/17 17:16:57+16 -3
Implemented 'secret' 'daniela2' style.
Revision 1.26fn 2009/03/17 16:44:21+2 -2
Correction in 'secret' style parameter.
Revision 1.25fnielsen 2005/10/19 11:12:24+29 -12
Implemented the FigureHandle property.
Revision 1.24fnielsen 2004/09/14 13:49:44+3 -3
Added brede_ta3_eyes to the help text.
Revision 1.23fnielsen 2004/09/14 13:48:57+4 -1
Added eyes to the popup menu.
Revision 1.22fnielsen 2004/06/02 16:32:57+8 -3
Added more options for setup of Drury model from the popup menu.
Revision 1.21fnielsen 2004/02/16 14:50:58+3 -2
Added construction of cameratoolbar.
Revision 1.20fnielsen 2003/12/22 19:14:08+5 -1
Added some more possible views in the popupmenu.
Revision 1.19fnielsen 2003/12/10 13:37:34+13 -2
Bugfix: workaround for bug in the cameramenu function.
Revision 1.18fnielsen 2003/12/04 17:21:44+14 -1
Added view to popupmenu.
Revision 1.17fnielsen 2003/11/25 15:01:18+16 -1
Added cameramenu.
Revision 1.16fnielsen 2003/11/24 18:23:39+9 -2
Added to help text.
Revision 1.15fnielsen 2003/11/06 16:37:55+7 -3
Added a bit to the help text.
Revision 1.14fnielsen 2003/07/22 11:00:13+2 -2
Included a link to brede_ta3.
Revision 1.13fnielsen 2003/05/23 14:42:35+8 -5
Change mapawamo space to jerom space.
Added grid lines for jerom space
Revision 1.12fnielsen 2002/09/05 13:45:24+7 -19
Added extra contours and axes.
Revision 1.11fnielsen 2002/05/23 14:10:28+3 -3
Added a 2cm grid to the default rendering.
Revision 1.10fnielsen 2002/03/08 17:44:22+68 -22
Added space property.
Revision 1.9fnielsen 2001/04/28 17:59:58+22 -2
Added 'Visible' property.
Revision 1.8fnielsen 2000/10/23 14:31:08+70 -16
Implemented style.
Revision 1.7fnielsen 2000/09/01 13:56:51+9 -2
Extended the cortex contour context menu.
Revision 1.6fnielsen 2000/07/06 18:49:04+7 -2
Added some extra "see also" in the help text
Added brede_ta3_concortex to the context menu."
Revision 1.5fnielsen 2000/05/29 19:24:17+26 -2
Added a contextmenu.
Revision 1.4fnielsen 2000/05/15 20:50:16+13 -120
Implemented backgroundcolor
Revision 1.3fnielsen 2000/05/15 15:04:54+7 -5
Changed the help text.
Revision 1.2fnielsen 2000/04/23 04:22:16+2 -2
Changed the background color.
Revision 1.1fnielsen 2000/04/23 04:14:24None
Initial version.

Filename: brede_ta3_grid.m
Revision 1.8fnielsen 2005/02/02 16:00:30+2 -2
Bugfix: Did not in certain situations test for correct graphics handle.
Revision 1.7fnielsen 2003/05/23 14:36:28+14 -7
Extended with one 1cm for type.
Revision 1.6fnielsen 2002/01/03 17:44:38+84 -61
Extended with the 'lines' property.
Revision 1.5fnielsen 2000/09/25 12:51:02+7 -7
Changed the tick's for the 2cm axis.
Revision 1.4fnielsen 2000/09/06 19:03:56+40 -12
Linestyle implemented.
Revision 1.3fnielsen 2000/07/25 19:22:35+2 -2
Bugfix: Could not change to a color where one of the components was zero.
Revision 1.2fnielsen 2000/05/29 19:22:34+14 -1
Added comment for suggestion on 'axis off' problem.
Revision 1.1fnielsen 2000/05/16 21:07:02None
Initial version.

Filename: brede_ta3_light.m
Revision 1.1fnielsen 2000/10/19 23:28:25None
Initial version.

Filename: brede_ta3_loc.m
Revision 1.30fn 2009/09/30 14:21:21+2 -2
Bugfix in the 'shadowcolor' property parsing
Revision 1.29fn 2009/03/23 17:48:33+59 -28
Extended to render the shadow in the pointtype style.
Revision 1.28fn 2008/03/12 14:32:29+3 -3
Typo corrections.
Revision 1.27fn 2006/05/29 17:35:09+2 -2
Bugfix: Did not work if input was a structure with a string or
cellstring as 'coord' field.
Revision 1.26fn 2006/04/18 15:10:52+52 -13
Added the 'colormap' property.
Added the 'value' option for the 'color' property.
Revision 1.25fnielsen 2005/06/10 12:41:00+2 -2
Bugfix: Failed if woexp field was numeric.
Revision 1.24fnielsen 2005/01/28 16:00:57+10 -1
Extended example in help text.
Revision 1.23fnielsen 2004/03/26 14:52:25+2 -2
Bugfix in the handle of NaN and defined coordinates.
Revision 1.22fnielsen 2004/03/25 18:30:49+439 -406
Changed to handle Loc structures with no coord field.
Revision 1.21fnielsen 2003/11/14 13:54:57+29 -4
Bugfix in connection with matrix input.
Revision 1.20fnielsen 2003/08/05 18:16:45+115 -77
Bugfix/extention in connection with TextAbove.
Extended to handle different types in the contextmenus.
Revision 1.19fnielsen 2003/07/31 15:40:23+5 -6
Changed so that the Scale of point is not determined by default by the
value field.
Revision 1.18fnielsen 2003/06/06 00:04:35+14 -2
Added FontSize property.
Revision 1.17fnielsen 2003/05/28 18:15:48+2 -2
Changed the default color to TextAbove to the color written in the
help text.
Revision 1.16fnielsen 2003/03/26 21:58:20+6 -4
Changed to call web-browser for web request instead of builtin matlab browser
Revision 1.15fnielsen 2003/03/06 19:24:56+23 -1
Extended to use the wobib and woexp fields in the context menu.
Revision 1.14fnielsen 2002/09/19 10:14:24+2 -2
Bugfix: Did not work when regionId was a cellstring.
Revision 1.13fnielsen 2002/09/11 16:25:16+2 -3
Bugfix: Did not work for sphere pointtypes.
Erase specularColor from help text since it wasn't implemented.
Revision 1.12fnielsen 2002/08/28 10:44:45+9 -30
Now handles an empty location structure: Immediately return without
rendering anything.
Revision 1.11fnielsen 2002/08/16 11:54:01+31 -5
Resolve merging conflict:
Added the ability to use the pValue and the sign for the determination
of the color.
Revision 1.10fnielsen 2002/08/15 19:05:22+14 -2
Extended to handle cells for some of the fields.
Revision 1.9fnielsen 2002/06/27 22:13:35+8 -3
Bugfix: Could not handle string input for the URL.
Revision 1.8fnielsen 2002/06/26 10:48:56+10 -3
Bugfix: The coloring of the glyphs depending on the pValue did not
work if some of the fields were empty.
Revision 1.7fnielsen 2002/05/23 14:13:56+57 -31
Now using 'value' and 'pValue' to control size and color of point.
Revision 1.6fnielsen 2000/10/19 16:33:37+204 -151
Bugfixes with group-color.
Implemented shadowColor.
Changed default shadow position.
Revision 1.5fnielsen 2000/09/01 13:54:22+31 -148
Implemented the shadow.
Revision 1.4fnielsen 2000/07/28 19:34:44+46 -4
Extended the 'Info' for the contextmenu.
Revision 1.3fnielsen 2000/07/25 11:05:13+128 -82
Bugfix: color was wrong.
Implemented stalk and textabove (shadow not implemented yet).
Revision 1.2fnielsen 2000/07/21 20:38:03+30 -52
'plus' pointtype implemented.
Revision 1.1fnielsen 2000/07/21 19:04:04None
Initial checkin. Still not everything implemented.

Filename: brede_ta3_mat.m
Revision 1.1fnielsen 2006/03/06 17:27:32None
Initial version.

Filename: brede_ta3_movie.m
Revision 1.3fnielsen 2003/11/24 14:50:54+14 -3
Extended help text.
Revision 1.2fnielsen 2001/07/17 18:32:07+1 -1
: added for cvs id.
Revision 1.1fnielsen 2001/07/17 18:31:48None
Initial version.

Filename: brede_ta3_patch.m
Revision 1.2fnielsen 2000/10/19 16:29:31+2 -2
Minor: Added BREDE in the see also list.
Revision 1.1fnielsen 2000/09/01 11:30:53None
Initial version.

Filename: brede_ta3_patchwall.m
Revision 1.2fnielsen 2000/10/19 16:28:41+9 -5
Changed the default position, changed the linewidth.
Revision 1.1fnielsen 2000/09/01 13:57:07None
Initial version.

Filename: brede_ta3_sur.m
Revision 1.8fn 2007/06/12 19:47:53+84 -13
Implemented type and alpha property.
Revision 1.7fnielsen 2003/12/01 23:44:47+14 -2
Implemented a tag attribute.
Revision 1.6fnielsen 2003/12/01 15:00:49+2 -2
Bugfix: Did not work with no color input.
Revision 1.5fnielsen 2003/11/29 01:42:34+221 -11
Extended with vertex color and new properties.
Revision 1.4fnielsen 2003/11/28 16:26:22+6 -4
Bugfix: Could not switch back to 'both'.
Revision 1.3fnielsen 2003/11/25 15:37:28+137 -5
Added a context menu and stored userdata.
Revision 1.2fnielsen 2003/11/24 18:36:22+8 -3
Added a default color.
Revision 1.1fnielsen 2003/11/21 14:08:22None
Initial version.

Filename: brede_ta3_sur_digitize.m
Revision 1.4fnielsen 2003/12/01 23:44:18+17 -8
Bugfix.
Revision 1.3fnielsen 2003/12/01 16:52:16+127 -10
First working version.
Revision 1.2fnielsen 2003/12/01 15:00:10+7 -3
Correction in See also field.
Revision 1.1fnielsen 2003/11/29 02:52:33None
Non-working version.

Filename: brede_ta3_tick.m
Revision 1.2fnielsen 2003/11/24 15:26:06+2 -2
Added to see also in help text.
Revision 1.1fnielsen 2000/09/06 19:03:18None
Initial version.

Filename: brede_ta3_view.m
Revision 1.4fnielsen 2003/12/03 18:44:25+23 -16
Added the 'RightHemisphere' to the 'type' property.
Revision 1.3fnielsen 2003/11/24 14:33:25+6 -5
Small changes in the help text.
Revision 1.2fnielsen 2002/01/03 17:43:43+56 -10
Extended with the 'Type' property.
Revision 1.1fnielsen 2001/06/25 22:05:21None
Initial version - draft.

Filename: brede_ta3_volslice.m
Revision 1.12fn 2008/03/12 14:31:58+3 -3
Typo corrections.
Revision 1.11fn 2007/06/12 19:47:12+11 -1
Added reading of 'info' property though it is not used.
Revision 1.10fnielsen 2004/11/11 21:59:45+64 -25
Implemented a 'projection' type property.
Revision 1.9fnielsen 2003/09/12 17:30:15+5 -3
Bugfix in connection for volume containing NaN values.
Revision 1.8fnielsen 2002/11/08 09:06:29+5 -1
Bugfix: Now handles colormap as strings.
Revision 1.7fnielsen 2002/05/26 12:18:57+63 -8
Extended to move the slice up and down.
Revision 1.6fnielsen 2000/07/25 10:44:45+56 -9
Bug in connection with y-position (found by Daniela Balslev)
Extended to handle both string and matricen for the colormap property.
Added an extra example in the help text.
Revision 1.5fnielsen 2000/07/06 18:43:36+183 -32
Added transparency handling, threshold property.
Added position, position property
Added color of the colormap range, range property.
Revision 1.4fnielsen 2000/05/15 19:34:32+9 -5
Bugfix: Parsing of property.
Now clipping is off.
Revision 1.3fnielsen 2000/05/15 15:16:32+85 -44
Extended with orthotype and colormap properties.
Revision 1.2fnielsen 2000/04/23 05:34:32+19 -8
Changed to use rgb color instead of indexed colors.
Revision 1.1fnielsen 2000/04/22 06:06:30None
Draft version.

Filename: brede_ta3_volsurf.m
Revision 1.27fnielsen 2005/10/20 12:40:13+23 -21
Disabled the creation of a volume-menu.
Revision 1.26fnielsen 2005/03/22 21:35:05+45 -3
Implemented DiffuseStrength, AmbientStrength and SpecularStrength property.
Revision 1.25fnielsen 2004/06/08 13:31:19+18 -8
Enabled to use a cell of length 1 as input.
Revision 1.24fnielsen 2003/11/29 03:24:58+43 -41
Resolved major merging conflict.
Revision 1.23fnielsen 2003/11/28 00:41:55+19 -22
Bugfix: Did not set the isosurface correctly for binary volumes.
Revision 1.22fnielsen 2003/11/26 19:20:09+30 -16
Enable to automatically determine a threshold in a binary volume.
Revision 1.21fnielsen 2003/11/24 17:16:36+20 -7
Extended help text.
Revision 1.20fnielsen 2003/11/14 17:22:58+6 -3
Added 'Shadow' property to the help text.
Revision 1.19fnielsen 2002/11/20 17:59:26+2 -2
Bugfix: Could not handle the description field as a cellstring.
Revision 1.18fnielsen 2002/10/01 15:43:12+5 -6
Bugfix: alpha property did not work.
Revision 1.17fnielsen 2002/08/28 10:56:15+6 -2
Now able to handle volume with zero for all element for the 'relative'
isosurface type.
Revision 1.16fnielsen 2002/05/17 19:36:13+38 -1
Constructed a Volume menu.
Revision 1.15fnielsen 2002/03/21 18:59:32+2 -2
Changed the alpha value to 1.
Revision 1.14fnielsen 2002/03/13 19:27:54+28 -5
Implemented ShadowPos
Revision 1.13fnielsen 2002/02/06 13:44:45+2 -2
Bugfix: Divide by zero when volume was zero in all voxels.
Revision 1.12fnielsen 2001/06/07 15:08:35+33 -5
Added Alpha property.
Revision 1.11fnielsen 2000/10/23 14:29:29+18 -9
Changed the rendering of the contours (shadows).
Revision 1.10fnielsen 2000/10/19 22:42:44+5 -1
Internal code change.
Revision 1.9fnielsen 2000/10/19 16:45:42+162 -56
Implemented shadow.
Changed default values of ambient, diffuse and specular color.
Revision 1.8fnielsen 2000/07/28 19:33:59+60 -1
Added the 'Info' on the contextmenu.
Revision 1.7fnielsen 2000/07/25 19:24:51+6 -6
Bugfix in connection with change of color.
Revision 1.6fnielsen 2000/07/21 20:35:47+34 -8
Added Reducepatch property.
Changed so the color changing dialog now is initialized with the color
of the graphics.
Revision 1.5fnielsen 2000/07/06 18:50:36+45 -11
Added the possibility to initial construct the isosurface as an edge.
Revision 1.4fnielsen 2000/06/02 16:53:18+3 -3
Changed the default downsampling.
Revision 1.3fnielsen 2000/05/12 09:21:01+67 -24
Extended with a new isosurface threshold method.
Revision 1.2fnielsen 2000/04/23 04:18:24+26 -6
Extended a bit: Push handle, downsample property.
Revision 1.1fnielsen 2000/04/22 23:24:25None
Initial version.

Filename: brede_tal_concere.m
Revision 1.3fnielsen 2002/04/17 16:22:23+18 -2
Added help text.
Revision 1.2fnielsen 2000/09/19 14:30:56+3 -2
Bugfix: wrote coordinates on screen as ";" was not in the end of the line.
Revision 1.1fnielsen 2000/09/01 11:48:33None
Initial version.

Filename: brede_ten.m
Revision 1.1fn 2008/08/21 16:45:40None
Initial version.

Filename: brede_ten_matricize.m
Revision 1.1fn 2008/08/21 14:47:11None
Initial version.

Filename: brede_ten_parafac.m
Revision 1.1fn 2008/08/21 16:46:15None
Initial draft version.

Filename: brede_ten_ten2ten.m
Revision 1.1fn 2008/08/21 14:49:42None
Initial version.

Filename: brede_tex_list.m
Revision 1.6fn 2006/07/19 17:49:19+57 -32
Added the LatexTableType.
Revision 1.5fnielsen 2003/09/02 14:40:01+41 -6
Added caption to the help text
Impremented precommands.
Revision 1.4fnielsen 2003/07/28 17:32:27+9 -4
Added description of filename property to the header.
Revision 1.3fnielsen 2003/07/24 18:53:51+52 -13
First proper working version.
Revision 1.2fnielsen 2003/06/03 23:16:46+4 -3
Minof fix: Corrected an error message and semicolon error.
Revision 1.1fnielsen 2003/06/03 00:25:08None
Initial version.

Filename: brede_ui.m
Revision 1.5fn 2008/06/12 17:02:24+11 -4
Added brede_ui_cel.
Revision 1.4fn 2007/07/12 12:52:47+9 -3
Added brede_ui_sur.
Revision 1.3fnielsen 2005/11/08 18:16:43+11 -2
Added brede_ui_rois.
Revision 1.2fnielsen 2005/08/24 20:31:03+7 -1
Added 'vols' to the file menu.
Revision 1.1fnielsen 2005/08/16 16:46:50None
Initial version.

Filename: brede_ui_bib.m
Revision 1.36fn 2008/04/22 09:44:21+2 -2
Correction of character encoding problem.
Revision 1.35fn 2008/03/12 14:31:34+11 -11
Typo corrections.
Revision 1.34fnielsen 2005/07/22 11:33:00+11 -2
Extended to match on variation of names for journals.
Revision 1.33fnielsen 2005/07/05 15:51:39+24 -2
Added a 'spawn' menu item.
Revision 1.32fnielsen 2005/07/05 14:10:41+29 -6
Added the databaseOwner graphical user interface controls.
Revision 1.31fnielsen 2005/06/09 19:28:16+242 -66
Extended to take advantage of new journal database.
Revision 1.30fnielsen 2005/02/02 16:05:07+9 -9
Bugfix: Did not read Mat file correctly.
Revision 1.29fnielsen 2005/02/01 18:17:09+24 -11
Extended the help text.
Revision 1.28fnielsen 2004/10/11 16:50:08+13 -2
Added example to help text.
Revision 1.27fnielsen 2004/10/05 17:11:08+3 -1
Added change of directory after saving.
Revision 1.26fnielsen 2004/09/08 13:25:34+4 -3
Bugfix: Did not setup the handles for the 'Exp' list correctly.
Revision 1.25fnielsen 2004/08/18 19:00:04+44 -4
Bugfix in Exp list.
Revision 1.24fnielsen 2004/08/12 15:06:24+79 -12
Implemented the overwrite button for the author list.
Revision 1.23fnielsen 2004/08/03 11:30:46+2 -1
Correction: A text field was not made invisible between pages.
Revision 1.22fnielsen 2004/07/09 15:38:23+216 -9
Implemented the editing and entry of authors.
Revision 1.21fnielsen 2004/07/08 17:08:20+27 -1
Implemented URL for PDF.
Revision 1.20fnielsen 2004/05/19 18:12:04+60 -15
Extended to be able to handle call from brede_ui_bibs.
Revision 1.19fnielsen 2004/03/25 18:33:35+404 -73
Bugfix: Did not update data structure before writing files.
Extended with a multipage layout: Several new fields and now editable.
Revision 1.18fnielsen 2003/05/23 10:19:24+2 -2
Fix or a bug that did not matter.
Revision 1.17fnielsen 2003/05/10 23:15:56+26 -1
Added open mat to file menu.
Revision 1.16fnielsen 2003/01/27 14:09:56+3 -2
Bugfix: Did not assign the ans variable in the workspace when the
exclamation mark was pressed.
Revision 1.15fnielsen 2002/11/20 18:01:13+11 -4
Changed to not use BackingStore.
Added a yes/no dialog in connection with closing of the window.
Revision 1.14fnielsen 2002/11/12 15:17:40+10 -1
Added Construct HTML menu command.
Revision 1.13fnielsen 2002/09/11 16:25:40+28 -3
Implemented corner cube legend.
Revision 1.12fnielsen 2002/08/15 19:06:58+29 -28
Implemented Corner Cube visualization.
Bugfix: in handle for exp list.
Revision 1.11fnielsen 2002/08/15 18:07:42+17 -1
Added opening of XML file.
Revision 1.10fnielsen 2002/08/15 17:09:39+15 -11
Erase 'Open' menu entry and added 'New'.
Extended help text.
Revision 1.9fnielsen 2002/08/10 20:17:31+60 -4
Added tooltop string
Added view menu.
Added readfields.
Revision 1.8fnielsen 2002/08/09 13:42:59+32 -6
Added a replicate button.
Revision 1.7fnielsen 2002/08/06 09:49:44+12 -3
Added tooltip string.
Revision 1.6fnielsen 2002/08/05 08:56:04+24 -6
Bugfix: handleExp was not updated when new structure was setup.
Bugfix: Error in error message.
Revision 1.5fnielsen 2002/08/05 08:38:22+55 -35
Implemented reading of cell and ordinary arrays.
Revision 1.4fnielsen 2002/07/30 22:31:52+161 -30
Extended to be able to interact with lyngby_ui_exp.
Revision 1.3fnielsen 2002/07/28 21:37:30+5 -3
Updated (small change)
Revision 1.2fnielsen 2002/07/26 23:42:54+64 -3
Added menu.
Revision 1.1fnielsen 2002/07/25 18:04:17None
Backup draft version.

Filename: brede_ui_bibs.m
Revision 1.14fn 2008/03/12 14:31:11+6 -6
Typo corrections.
Revision 1.13fn 2006/06/30 10:49:21+44 -13
Bugfix: Did not work with array type of input arguments
Bugfix: Did not construct the 'Corner Cube Legend'.
Revision 1.12fnielsen 2006/01/31 18:03:34+20 -5
Extended to spawn vol structures.
Revision 1.11fnielsen 2005/08/23 18:12:30+24 -2
Extended to spawn a Loc x coord matrix.
Revision 1.10fnielsen 2005/08/18 19:26:00+28 -13
Implemented loading of the Brede Database.
Revision 1.9fnielsen 2005/03/22 19:20:55+24 -5
Extended with 'Spawn' menu and an item for generating 'mat' structures
abstract words.
Revision 1.8fnielsen 2005/02/02 17:41:29+13 -5
Changed to be able to both read a B and a Bibs variable from a Mat file.
Revision 1.7fnielsen 2005/02/02 15:58:50+7 -17
Bugfix: Did not read Mat file correctly.
Revision 1.6fnielsen 2004/11/09 15:56:06+8 -4
Extended to handle 'bib' structures as input.
Revision 1.5fnielsen 2004/10/13 21:37:29+19 -2
Added to a view exp to the menu.
Revision 1.4fnielsen 2004/10/11 17:13:14+24 -2
Extended help text
Now changes directory after loading XML file.
Revision 1.3fnielsen 2004/09/10 17:10:57+14 -4
Bugfix in reading of Mat files.
Revision 1.2fnielsen 2004/05/19 18:09:09+3 -3
Bugfix in HTML generation.
Revision 1.1fnielsen 2004/05/19 15:41:47None
Initial version.

Filename: brede_ui_cel.m
Revision 1.6fn 2009/08/04 12:35:19+10 -2
Added an item more to the genotype matrix construction.
Revision 1.5fn 2009/04/30 17:11:48+23 -21
Now displays the content of the element with mouse button.
Revision 1.4fn 2008/06/23 15:28:28+24 -2
Extended in column extraction and 'mat' extraction with genotype.
Revision 1.3fn 2008/06/23 13:25:49+43 -9
Bugfix: Wrong list dialog for columns extraction.
Revision 1.2fn 2008/06/12 17:33:50+38 -4
Extended column extraction.
Revision 1.1fn 2008/06/12 17:01:24None
Initial version.

Filename: brede_ui_exp.m
Revision 1.113fn 2008/03/12 14:30:46+11 -11
Typo corrections.
Revision 1.112fnielsen 2005/09/23 15:35:15+4 -1
Added to popups.
Revision 1.111fnielsen 2005/09/21 19:20:54+61 -9
Bugfix around warning messages in popup menus.
Extended with the field of view description.
Revision 1.110fnielsen 2005/08/24 12:09:37+3 -3
Clarified a popup text.
Revision 1.109fnielsen 2005/08/18 17:11:59+8 -5
Extended popupmenu
Made the scanner popup behave more intuitively.
Revision 1.108fnielsen 2005/06/09 19:27:34+3 -1
Added to popup (Hamburg University).
Revision 1.107fnielsen 2005/05/03 18:32:54+6 -1
Added to scanner popup.
Revision 1.106fnielsen 2005/04/14 09:41:58+8 -1
Added to popupmenus.
Revision 1.105fnielsen 2005/04/13 17:12:20+3 -1
Added to labOfExperiment popup.
Revision 1.104fnielsen 2005/04/13 14:35:36+3 -1
Added to labOfExperiment popup.
Revision 1.103fnielsen 2005/04/12 12:47:54+6 -2
Added to scanner popup menu.
Revision 1.102fnielsen 2005/04/12 10:58:55+2 -1
Added to popup menu.
Revision 1.101fnielsen 2005/04/07 10:03:02+3 -3
Bugfix: Did not call the brede_ui_loc_init correctly resulting in a
error "Argument to 'BrainTemplate' should be a string"
Revision 1.100fnielsen 2005/02/24 20:20:04+117 -38
Constructed an extra popupmenu for scanner.
Added to popups
Revision 1.99fnielsen 2005/02/21 18:12:41+7 -2
Added to popup.
Revision 1.98fnielsen 2005/02/16 21:20:59+3 -1
Added to popupmenu.
Revision 1.97fnielsen 2005/02/10 22:28:35+4 -1
Added to popup.
Revision 1.96fnielsen 2005/02/04 19:03:53+2 -1
Added to popup.
Revision 1.95fnielsen 2005/02/04 18:19:26+6 -3
Correction and addition in popup.
Revision 1.94fnielsen 2005/02/04 15:42:24+9 -4
Added to popup.
Revision 1.93fnielsen 2005/02/03 13:12:21+8 -1
Added information to popup labOfExperiment and analysisSoftware.
Revision 1.92fnielsen 2005/02/01 16:17:41+2 -2
Spelling error in labofexperiment.
Revision 1.91fnielsen 2005/01/31 15:16:51+3 -1
Added to popup.
Revision 1.90fnielsen 2005/01/28 17:29:53+2 -1
Added to tracer popup.
Revision 1.89fnielsen 2005/01/24 15:59:46+2 -1
Added to popup.
Revision 1.88fnielsen 2005/01/21 17:59:55+44 -2
Extended with referral.
Revision 1.87fnielsen 2005/01/20 16:17:34+2 -1
Added to popup.
Revision 1.86fnielsen 2005/01/20 15:12:16+2 -1
Added to popup.
Revision 1.85fnielsen 2005/01/19 17:04:01+2 -2
Error correction in popup string.
Revision 1.84fnielsen 2005/01/13 15:33:00+3 -1
Added to popups.
Revision 1.83fnielsen 2004/12/29 22:40:54+3 -1
Added to labOfExperiment popup.
Revision 1.82fnielsen 2004/11/18 12:28:11+16 -3
Added to popups.
Revision 1.81fnielsen 2004/10/23 00:28:31+3 -1
Added to popups.
Revision 1.80fnielsen 2004/10/14 17:02:28+3 -1
Added to popupmenu.
Revision 1.79fnielsen 2004/10/13 14:00:48+4 -1
Added to popup.
Revision 1.78fnielsen 2004/10/13 12:52:06+91 -26
Made a new isotope popup.
Added to popup.
Revision 1.77fnielsen 2004/10/11 16:49:46+4 -1
Added to popup.
Revision 1.76fnielsen 2004/09/14 13:57:27+9 -3
Added to popup menu.
Revision 1.75fnielsen 2004/09/13 16:07:18+4 -1
Added to popupmenus.
Revision 1.74fnielsen 2004/09/09 08:23:13+7 -5
Added to popup menus.
Revision 1.73fnielsen 2004/09/08 18:14:02+8 -4
Added to disease popup.
Revision 1.72fnielsen 2004/09/06 18:58:06+5 -2
Added to popup.
Revision 1.71fnielsen 2004/08/23 14:23:52+2 -1
Added Tourette's syndrome.
Revision 1.70fnielsen 2004/05/28 14:29:18+5 -2
Added items to popup menu.
Revision 1.69fnielsen 2004/05/19 18:11:37+6 -3
Now shows initially the number locs defined.
Revision 1.68fnielsen 2004/05/19 00:49:42+9 -12
Added to popup menus.
Revision 1.67fnielsen 2004/05/18 17:13:33+128 -3
Extended with segmentationTemplate and gender.
Revision 1.66fnielsen 2004/05/18 08:27:40+107 -10
Extended with age edit fields.
Revision 1.65fnielsen 2004/05/10 16:49:38+3 -1
Added to popup menus.
Revision 1.64fnielsen 2004/04/29 09:47:46+2 -1
Added Paroxetine.
Revision 1.63fnielsen 2004/03/26 14:52:48+7 -5
Added to popup menu.
Revision 1.62fnielsen 2004/03/25 18:32:10+8 -2
Bugfix: Did not update the data structure before writing files.
Extended popupMenus: Altanserin and distribution volume.
Revision 1.61fnielsen 2004/03/10 09:59:21+6 -3
Added to popup menus.
Revision 1.60fnielsen 2004/02/10 19:46:03+3 -1
Bugfix: Did not set the spatialFilter if the input was a cellstring.
Revision 1.59fnielsen 2004/01/28 10:45:19+2 -3
Added Lipsia.
Revision 1.58fnielsen 2003/12/19 18:12:18+5 -1
Added to labOfExperiment.
Revision 1.57fnielsen 2003/12/19 11:00:28+3 -1
Added to labOfExperiment.
Revision 1.56fnielsen 2003/12/18 14:58:08+4 -1
Updated.
Revision 1.55fnielsen 2003/12/17 13:55:53+2 -1
Added to labofexperiment.
Revision 1.54fnielsen 2003/12/10 11:09:58+3 -1
Added to LabOfExperiment.
Revision 1.53fnielsen 2003/10/03 09:36:49+3 -1
Added labofexperiment.
Revision 1.52fnielsen 2003/08/21 12:40:36+3 -1
Added to labOfExperiment popupmenu.
Revision 1.51fnielsen 2003/08/08 16:30:44+3 -1
Added to labOfExperiment popupmenu.
Revision 1.50fnielsen 2003/08/04 17:29:14+2 -2
Corrected spelling error.
Revision 1.49fnielsen 2003/08/01 13:24:48+3 -1
Added to popup menu.
Revision 1.48fnielsen 2003/07/31 10:36:17+110 -7
Added to popupmenu.
Revision 1.47fnielsen 2003/07/29 08:58:31+3 -3
Added to a popup.
Revision 1.46fnielsen 2003/07/23 11:31:19+3 -2
Added items to popup lists.
Revision 1.45fnielsen 2003/07/15 21:50:10+6 -1
Added to popup menu.
Revision 1.44fnielsen 2003/07/11 18:18:50+4 -1
Added items to measuredVariable and tracer.
Revision 1.43fnielsen 2003/07/10 16:57:13+7 -1
Added Finland to labOfExperiment.
Revision 1.42fnielsen 2003/05/20 15:01:48+3 -1
Added Iowa to labOfExperiments.
Revision 1.41fnielsen 2003/04/29 15:45:53+2 -1
Added a labOfExperiment.
Revision 1.40fnielsen 2003/04/25 15:23:26+3 -1
Added to labOfExperiment popup.
Revision 1.39fnielsen 2003/04/17 01:13:01+3 -1
Added to labOfExperiment.
Revision 1.38fnielsen 2003/04/14 23:27:25+2 -2
Added fear to emotion in behavioral domain popup.
Revision 1.37fnielsen 2003/04/10 13:45:23+2 -2
Switched Denmark and Sweden in pop menu
Revision 1.36fnielsen 2003/04/04 20:00:34+6 -2
Added to popup.
Revision 1.35fnielsen 2003/04/03 13:10:12+4 -2
Added to labOfExperiment and behavioralDomain popupMenus.
Revision 1.34fnielsen 2003/03/30 17:21:16+3 -1
Added Julich to labOfExteperiment.
Revision 1.33fnielsen 2003/03/19 22:04:02+4 -1
Added a labOfExperiment.
Revision 1.32fnielsen 2003/03/11 21:18:45+26 -6
Added the PAN brain template.
Now pipes the Brain template to brede_ui_loc and brede_ui_loc_init.
Revision 1.31fnielsen 2003/03/06 19:27:36+2 -3
Erase the E-accelerator since it was in conflict with ordinary unix functionality.
Revision 1.30fnielsen 2003/02/28 15:36:58+10 -3
Added to the labOfExperiment list.
Revision 1.29fnielsen 2003/02/27 14:32:17+62 -18
Added two buttons to lookup web pages for information.
Revision 1.28fnielsen 2003/02/26 09:01:59+8 -2
Added more analysissoftware and labofexperiment.
Revision 1.27fnielsen 2003/02/07 11:35:37+8 -5
Added French labOfExperiments.
Revision 1.26fnielsen 2003/02/05 12:38:12+7 -2
Bugfix: Lab of experiment did not work for Japan.
Revision 1.25fnielsen 2003/01/23 22:15:40+124 -38
Added a popu for coutry for labOfExperiment.
Revision 1.24fnielsen 2003/01/22 13:16:02+3 -1
Added laboratories.
Revision 1.23fnielsen 2003/01/21 14:26:01+2 -2
Added MNI_AutoReg.
Revision 1.22fnielsen 2002/11/20 16:00:08+4 -3
Bugfix: setup of WOEXT field did not work.
Changed to not use BackingStore for figure, which seems to make the
rendering of the figure faster.
Revision 1.21fnielsen 2002/11/19 17:30:18+102 -10
Implemented the WOEXT field.
Implemented file save and load of XML.
Implemented view 'exp' structure.
Revision 1.20fnielsen 2002/11/12 13:14:53+2 -1
Added an other Brain template.
Revision 1.19fnielsen 2002/11/08 09:03:05+4 -1
Added new institution.
Revision 1.18fnielsen 2002/11/05 13:48:08+4 -4
Added Musical instrument in Perception,Audition.
Revision 1.17fnielsen 2002/09/13 19:50:47+16 -7
Added a bit more to the behavioral domain subtype.
Revision 1.16fnielsen 2002/09/11 15:15:07+2 -2
Minor bugfix: added semicolon.
Revision 1.15fnielsen 2002/09/11 14:56:44+11 -4
Bugfix: Did not correctly overwrote old fields of behavioral domain
and analysis software.
Added 'Focused attention'.
Revision 1.14fnielsen 2002/08/22 16:25:54+5 -3
Added scanner, lab and software.
Revision 1.13fnielsen 2002/08/15 19:07:21+15 -1
Added Corner cube visualization.
Revision 1.12fnielsen 2002/08/13 16:26:21+28 -12
Added the Init button for the 'loc' window and the call to the
brede_ui_loc_init function.
Revision 1.11fnielsen 2002/08/10 20:18:16+26 -1
Added University and scanners.
Revision 1.10fnielsen 2002/08/06 17:25:18+4 -1
Added Bruker scanners.
Revision 1.9fnielsen 2002/08/06 09:12:31+3 -1
Added an Isrealean institution.
Revision 1.8fnielsen 2002/08/06 09:02:39+97 -19
Added new scanners, measured variables, modality and analysis software.
Help text and tooltip string extended.
Added button for See.
Cleaned the uicontrols for the 'bib' structure.
Revision 1.7fnielsen 2002/08/05 20:00:08+10 -2
Spelling correction.
Added more scanners.
Revision 1.6fnielsen 2002/08/05 09:26:54+9 -1
Implemented cell as input.
Revision 1.5fnielsen 2002/08/04 00:51:24+62 -7
Implement communication with brede_ui_loc window
Extended help text.
Other small changes.
Revision 1.4fnielsen 2002/07/30 22:32:16+126 -19
Extended to interact with brede_ui_bib.
Revision 1.3fnielsen 2002/07/29 14:52:56+8 -4
Updated.
Revision 1.2fnielsen 2002/07/26 23:39:29+335 -38
Added new fields.
Revision 1.1fnielsen 2002/07/25 14:24:24None
Backup draft version.

Filename: brede_ui_getfiles.m
Revision 1.6fn 2008/03/12 14:30:19+4 -4
typo corrections.
Revision 1.5fnielsen 2005/10/11 10:15:40+21 -5
Implemented a load functionality.
Revision 1.4fnielsen 2005/10/04 14:46:01+28 -2
Extended to write files with no path information and more options for
the filter popup.
Revision 1.3fnielsen 2005/09/16 10:49:06+19 -3
Changed the OK and Cancel buttons to a single close button.
Revision 1.2fnielsen 2005/08/24 20:31:27+12 -2
Extended the help text.
Revision 1.1fnielsen 2005/08/18 16:20:23None
Initial version.

Filename: brede_ui_loc.m
Revision 1.37fn 2008/03/31 14:18:27+14 -2
Added Wikipedia template generation.
Revision 1.36fn 2008/03/12 14:29:27+10 -10
Typo corrections.
Revision 1.35fn 2006/04/21 13:41:17+15 -7
Added more information to the help text.
Revision 1.34fnielsen 2005/09/23 15:56:51+12 -8
Added pValueClusterCorrected.
Revision 1.33fnielsen 2005/02/24 14:39:39+62 -8
Bugfix: Did not read fields before spawning a volume
Extended to spawn 'mat' structures
Extended to read in example 'loc' structure.
Revision 1.32fnielsen 2005/02/02 17:45:03+16 -3
Added a menu item for spawning of a volume.
Revision 1.31fnielsen 2005/01/27 19:57:34+76 -15
Extended to show coord field through x, y, z.
Revision 1.30fnielsen 2005/01/21 17:59:01+5 -1
Added a unit in the insert unit menu.
Revision 1.29fnielsen 2004/10/01 15:33:37+273 -248
Extended to read in comma separated files and rearrange the columns
according to the new fields.
Revision 1.28fnielsen 2004/09/22 17:41:00+26 -4
Extended to read CSV files.
Revision 1.27fnielsen 2004/09/09 11:25:10+36 -3
Added a menu item to fill in the unit field.
Revision 1.26fnielsen 2004/09/06 19:56:51+6 -2
Added the 'unit' field.
Revision 1.25fnielsen 2004/08/05 17:13:05+59 -3
Enabled to and loc structure with wobib and woexp and the 'fields'.
Extended to construct HTML and return loc structure.
Extended to construct tranversal slice plot.
Revision 1.24fnielsen 2004/05/18 08:28:07+37 -2
Extended with valueMin, valueMax and woroi.
Revision 1.23fnielsen 2004/05/10 17:19:15+3 -2
Extended to allow for pValue field.
Revision 1.22fnielsen 2004/03/25 18:29:36+41 -10
Extended with handling of value, valueStd and valueCov.
Changed to write an XML file with a <Locs> as the main structure
rather than several <loc>.
Revision 1.21fnielsen 2003/04/11 15:37:03+19 -5
Bugfix: Did not load XML.
Bugfix: Did not read the fields properly when saving.
Revision 1.20fnielsen 2003/03/11 21:16:30+34 -9
Added the BrainTemplate property.
Revision 1.19fnielsen 2003/01/31 20:06:38+4 -4
Bugfix: did not setup the correct number of fields if input locations
were given.
Revision 1.18fnielsen 2003/01/27 14:14:21+33 -9
Added a error message if numeric fields could not be read.
Revision 1.17fnielsen 2003/01/24 22:27:13+10 -7
Bugfix: numberOfLoc was not handled correctly
Bugfix: Last location was not saved if was 10, 20, 30 ...
Revision 1.16fnielsen 2003/01/23 22:16:41+19 -7
Added numberOfLoc property.
Revision 1.15fnielsen 2002/11/20 18:02:22+7 -3
Bugfix in connection with stdReported.
Now not using BackingStore.
Revision 1.14fnielsen 2002/11/19 17:32:20+55 -5
Extended help text.
Extended with xStd fields.
Revision 1.13fnielsen 2002/11/12 14:42:06+5 -1
Added percentChange field.
Revision 1.12fnielsen 2002/11/08 09:02:35+58 -22
Added new fields.
Revision 1.11fnielsen 2002/09/19 10:14:52+9 -5
Increased the number of locations.
Added the regionId.
Revision 1.10fnielsen 2002/09/11 16:37:45+5 -1
Added pValueCluster.
Revision 1.9fnielsen 2002/08/15 17:52:03+35 -3
Added functionalArea, tValue, fValue.
Revision 1.8fnielsen 2002/08/13 16:25:28+12 -6
Bugfix: could not handle a Loc input argument that was empty.
Added the pValueCorrected.
Revision 1.7fnielsen 2002/08/12 11:47:21+29 -4
Extended help text
Added fields property
Added P-value uncorrected.
Revision 1.6fnielsen 2002/08/09 13:42:37+2 -2
Now clearing the last entries if they are not defined.
Revision 1.5fnielsen 2002/08/05 09:26:25+25 -15
Increase the default number of locations to 30
Implemented handling of cell, string, and numeric for location fields.
Revision 1.4fnielsen 2002/08/04 00:54:43+29 -10
Implemented a 'View' menu with corner cube visualization.
Bugfixes in connection with communication with brede_ui_exp.
Revision 1.3fnielsen 2002/08/03 17:29:58+238 -76
Implmented reading of fields and writing of XML.
Revision 1.2fnielsen 2002/08/02 17:24:22+267 -31
Adjusted the placement of edit fields.
Added paging.
Added menu.
Revision 1.1fnielsen 2002/07/26 23:42:10None
Initial draft backup version.

Filename: brede_ui_loc_init.m
Revision 1.18fn 2008/03/12 14:29:57+3 -3
Typo corrections.
Revision 1.17fnielsen 2005/09/23 15:36:19+6 -3
Added pValueClusterCorrected and excluded the automated inclusion of coordReported.
Revision 1.16fnielsen 2004/09/06 19:57:03+2 -2
Added the unit field.
Revision 1.15fnielsen 2004/05/18 08:28:44+3 -3
Extended with valueMin, valueMax, woroi.
Revision 1.14fnielsen 2004/05/10 17:19:48+2 -1
Extended to be able to choose pValue as a field.
Revision 1.13fnielsen 2004/03/25 18:24:06+16 -6
Added value, valueCov and valueStd.
Revision 1.12fnielsen 2003/04/16 10:55:50+22 -2
Extended to setup the included list from the fields of the input Loc variable.
Revision 1.11fnielsen 2003/03/11 21:18:09+23 -5
Added the BrainTemplate property.
Revision 1.10fnielsen 2003/01/23 22:16:17+30 -4
Added numberOfLoc uicontrols.
Revision 1.9fnielsen 2002/11/29 09:54:13+3 -2
Added BackingStore off to figure property.
Revision 1.8fnielsen 2002/11/19 17:32:35+3 -2
Extended with xStd fields.
Revision 1.7fnielsen 2002/11/12 14:41:47+4 -4
Added percentChange.
Made listbox larger.
Revision 1.6fnielsen 2002/11/08 09:01:44+9 -5
Added new fields.
Revision 1.5fnielsen 2002/09/19 10:15:08+2 -2
Added regionId.
Revision 1.4fnielsen 2002/09/11 15:15:33+3 -2
Added pValueCluster.
Revision 1.3fnielsen 2002/08/15 17:52:46+3 -2
Added functionalArea, tValue, fValue.
Revision 1.2fnielsen 2002/08/13 16:31:38+18 -21
Now closing the window on OK button press.
Piping the Loc structure (from brede_ui_exp) further on to brede_ui_loc.
Revision 1.1fnielsen 2002/08/12 11:28:05None
Initial version.

Filename: brede_ui_mat.m
Revision 1.44fn 2009/08/04 12:08:02+22 -4
Added more functionality to the extraction of columns and rows.
Revision 1.43fn 2008/07/01 12:55:02+2 -2
Bugfix in extraction of columns with list dialog.
Revision 1.42fn 2008/07/01 12:47:20+43 -5
Extended the extraction of columns.
Revision 1.41fn 2008/06/05 18:56:52+47 -51
Extended to be able to write CSV files with decimal separator as a comma.
Revision 1.40fn 2008/05/30 15:21:10+13 -1
Added correlation coefficient on rows.
Revision 1.39fn 2008/05/29 13:11:37+15 -12
Bugfix: Did not report the maxima correctly in some cases.
Some changes for the menu items.
Revision 1.38fn 2007/12/06 16:36:04+1112 -1104
Code indentation.
Added computation of correlation coefficients across columns.
Revision 1.37fn 2007/11/16 17:22:40+10 -1
Implemented brede_mat_concordance menu item.
Revision 1.36fn 2007/10/31 00:03:11+3 -3
Extended help text.
Revision 1.35fn 2007/10/23 12:52:59+50 -6
Added reading of 4D Analyze files.
Revision 1.34fn 2007/08/13 18:12:26+50 -1
Added 'Pop max elements'.
Revision 1.33fn 2007/06/27 19:46:10+172 -2
Implemented new menu items for intraclass correlation coefficient,
Example data sets, and spawning to partial correlation analysis.
Revision 1.32fn 2007/03/26 17:19:42+115 -38
Some K-means clustering functionality added
Moved around the menu items.
Revision 1.31fn 2006/08/17 11:23:29+11 -4
Implemented spawning of 'loc' structures.
Revision 1.30fn 2006/08/10 09:21:39+2 -2
Changed formating of value printed in title field.
Revision 1.29fn 2006/07/31 17:12:02+103 -3
Added singular value decomposition.
Revision 1.28fnielsen 2006/01/31 18:12:53+9 -2
Bugfix: Did not render the ytick label well if they where very long.
Revision 1.27fnielsen 2006/01/05 12:07:11+2 -2
Bugfix: Call to 'hist' matlab function was not an integer which made
the hist function perform strangely/erroneously.
Revision 1.26fnielsen 2005/12/05 11:42:58+8 -2
Extended help text.
Revision 1.25fnielsen 2005/11/11 16:16:19+21 -1
Extended to spawn centered 'mat' structures.
Revision 1.24fnielsen 2005/11/11 13:27:10+39 -24
Added menu commands.
Revision 1.23fnielsen 2005/10/31 16:06:42+5 -1
Extended to write a string as the row tick mark.
Revision 1.22fnielsen 2005/08/31 19:08:32+36 -2
Added row and column sum and mean operations in the menu.
Revision 1.21fnielsen 2005/08/29 23:24:34+10 -1
Added spawning of 'vols' structures.
Revision 1.20fnielsen 2005/08/29 16:26:47+14 -2
Implemented the possibility to save as a CSV file.
Revision 1.19fnielsen 2005/08/26 12:39:03+2 -2
Bugfix in semicolon CSV files.
Revision 1.18fnielsen 2005/08/26 12:36:32+95 -32
Extended to read semicolon-separated files.
Fixed problem with empty CSV files.
Revision 1.17fnielsen 2005/08/24 20:30:45+65 -27
Implemented plotting of column and row sum.
Revision 1.16fnielsen 2005/08/19 13:04:30+36 -4
Updated.
Revision 1.15fnielsen 2005/07/04 16:00:35+20 -1
Added the reading of affine matrix from SPM sn file.
Revision 1.14fnielsen 2005/07/01 19:53:12+41 -1
Extended to new menu items: AIR file saving and 'new' command.
Revision 1.13fnielsen 2005/05/23 21:45:37+4 -3
Added gray colormaps to the menu
Revision 1.12fnielsen 2005/04/15 16:01:14+20 -1
Extended with more scaling options
Revision 1.11fnielsen 2005/04/07 16:55:14+52 -13
Extended with new menu items.
Revision 1.10fnielsen 2005/04/06 16:06:55+19 -2
Added file opening of AIR files.
Revision 1.9fnielsen 2005/04/05 17:10:09+21 -5
Added menu items for different number of iterations for NMF.
Revision 1.8fnielsen 2005/02/24 14:41:03+19 -7
Bugfix: Did not work if columns or rows were arrays.
Extended with colormap in menu.
Extended to be able to handle a numerical matrix as input.
Revision 1.7fnielsen 2005/02/07 18:59:05+34 -7
Extended with new menu options.
Revision 1.6fnielsen 2005/02/02 17:45:21+3 -3
Correction in help text.
Revision 1.5fnielsen 2005/01/26 18:13:15+55 -22
Added more functionalities in the menu.
Revision 1.4fnielsen 2005/01/11 20:25:06+53 -5
Bugfix: Mouse clicking in matrix image did not always work.
Added two extract menu items.
Revision 1.3fnielsen 2004/11/16 19:22:35+4 -2
Added to the help text.
Revision 1.2fnielsen 2004/11/11 21:45:16+60 -13
Extended.
Revision 1.1fnielsen 2004/11/10 19:19:39None
Initial version.

Filename: brede_ui_mat_partcorrcoef.m
Revision 1.29fn 2008/06/23 15:25:07+56 -4
Extension to extract rows without NaN.
Revision 1.28fn 2008/05/28 19:28:51+61 -29
Added evolution of partial correlation.
Revision 1.27fn 2008/04/09 19:16:33+205 -26
Added "Set mouse click" to view menu.
Changed to delete the results with new data is read.
Revision 1.26fn 2008/02/19 19:19:44+47 -5
Implemented more choices for reading volume files.
Revision 1.25fn 2007/11/13 12:02:47+42 -3
Added interbattery factor analysis and help for partial correlation
analysis test.
Revision 1.24fn 2007/11/08 22:53:55+2 -2
Spelling error in help text.
Revision 1.23fn 2007/11/01 18:57:31+51 -2
Implemented the 'Pop rows description' menu item.
Revision 1.22fn 2007/10/30 15:29:11+1151 -1150
Changed code indentation.
Revision 1.21fn 2007/10/30 15:27:34+37 -5
Implemented menu item with 100000 iteration for the corrected p-value
computation.
Extended help text.
Revision 1.20fn 2007/06/15 18:03:11+4 -3
Bugfix in descriptionColumn and in header.
Revision 1.19fn 2007/06/15 17:09:59+75 -4
Implemented the write CSV with results option in the menu.
Revision 1.18fn 2007/06/12 13:00:54+28 -2
Added menu option for 1000-iterations permutation test.
Revision 1.17fn 2007/06/12 12:38:40+10 -2
Bugfix/Extension to handle voxel coordinates in the second matrix.
Revision 1.16fn 2007/05/31 18:24:35+36 -5
Extended with choice for number of iterations in permutation test.
Revision 1.15fn 2006/05/23 20:58:17+6 -2
Minor additions to help text.
Revision 1.14fnielsen 2006/01/05 12:34:41+74 -5
Implement the plotting of a line in the scatter plot.
Extended the help text.
Revision 1.13fnielsen 2005/11/11 13:34:07+2 -2
Bugfix: Setup the wrong matrix when called with two ore more matrices
as input.
Revision 1.12fnielsen 2005/10/27 10:55:39+26 -13
Bugfix: Faulty menu item for CSV file write of partial correlation coefficient.
Revision 1.11fnielsen 2005/10/20 15:20:39+32 -2
Implemented menu options for writing out P-values in CSV files.
Revision 1.10fnielsen 2005/10/20 14:53:27+6 -1
Extended to display the corrected P-value if this is available.
Revision 1.9fnielsen 2005/10/06 14:52:35+82 -8
Extended with 6 matrix images plot.
Revision 1.8fnielsen 2005/09/22 09:26:40+5 -4
Internal code change: Short circuit logicals.
Revision 1.7fnielsen 2005/08/31 19:09:54+116 -61
Changed and operator in conditional sentences.
Revision 1.6fnielsen 2005/08/26 14:30:25+29 -3
Implemented plotting of residuals.
Revision 1.5fnielsen 2005/08/23 17:44:54+98 -23
Enabled input arguments.
Extended with view functions.
Revision 1.4fnielsen 2005/08/19 13:14:07+22 -3
Extended to read data from volumes.
Revision 1.3fnielsen 2005/08/17 14:30:04+1 -2
Minor bugfix: Printed a bug message.
Revision 1.2fnielsen 2005/08/16 18:52:48+170 -2
Implemented permutation test
Implemented the grab functionality.
Revision 1.1fnielsen 2005/08/16 16:45:57None
Initial version.

Filename: brede_ui_roi.m
Revision 1.4fn 2008/03/12 14:28:52+7 -7
Typo corrections.
Revision 1.3fn 2006/08/17 12:29:39+43 -3
Added Spawning of coordinates.
Revision 1.2fnielsen 2005/11/17 15:55:07+11 -21
Bugfix: Did not work if the input 'roi' structure contained a structure.
Revision 1.1fnielsen 2005/11/08 18:35:11None
Initial version - still somewhat a draft.

Filename: brede_ui_rois.m
Revision 1.4fn 2008/03/12 14:28:29+6 -6
Typo corrections.
Revision 1.3fn 2006/08/17 12:09:47+41 -12
Extended to handle 'Rois' structures as input.
Revision 1.2fnielsen 2005/11/09 14:34:55+2 -2
Bugfix: Did not construct the names for each Roi correctly.
Revision 1.1fnielsen 2005/11/08 18:35:43None
Initial version.

Filename: brede_ui_sur.m
Revision 1.2fn 2007/07/13 09:58:52+2 -2
Bugfix: Save in file menu did not work.
Revision 1.1fn 2007/07/12 23:10:06None
Initial version.

Filename: brede_ui_talspace_digitize.m
Revision 1.3fn 2006/07/17 17:57:19+13 -5
Added help text and checks for the Talairach Space Utility.
Revision 1.2fnielsen 2003/01/22 17:59:12+36 -16
Initial working version for coronal slices.
Revision 1.1fnielsen 2003/01/16 20:20:55None
Initial version.

Filename: brede_ui_vol.m
Revision 1.13fn 2009/10/15 15:25:26+32 -4
Extended to be able to call the register function.
Revision 1.12fn 2009/10/13 18:23:58+84 -13
Extended with image view.
Revision 1.11fn 2008/04/22 12:39:51+59 -1
Added viewing of mean, minimum and maximum.
Revision 1.10fn 2008/04/22 12:10:24+325 -325
Change code indentation.
Revision 1.9fnielsen 2005/10/18 15:56:39+28 -1
Added a menu item.
Revision 1.8fnielsen 2005/10/11 13:56:18+26 -3
Added menu option for spawning a 'mat' structure and a negated volume.
Revision 1.7fnielsen 2005/10/05 13:34:44+18 -2
Added a menu item for loading the cerebellum1 segmentation.
Revision 1.6fnielsen 2005/09/22 17:28:25+6 -1
Bugfix: Did not clear the figure correctly when loading a new volume.
Revision 1.5fnielsen 2005/09/22 17:07:23+76 -11
Added new items to the menu.
Revision 1.4fnielsen 2005/09/16 19:49:29+13 -1
Added a cameramenu.
Revision 1.3fnielsen 2005/08/18 19:26:27+15 -2
Implemented saving of analyze file.
Revision 1.2fnielsen 2005/07/12 19:55:03+19 -5
Added an operation with a possibility to set the origin field to 0.
Revision 1.1fnielsen 2005/02/02 17:41:40None
Initial version.

Filename: brede_ui_vols.m
Revision 1.13fn 2009/10/15 15:45:33+21 -4
Implemented the plot maximum.
Revision 1.12fn 2008/04/03 19:47:34+37 -3
Extended with option for generating HTML.
Revision 1.11fn 2007/10/24 17:50:17+415 -415
New code indentation
Revision 1.10fnielsen 2005/11/04 17:28:38+2 -2
Error in menu name.
Revision 1.9fnielsen 2005/11/04 16:09:53+51 -4
Extended the possibilities to spawn 'mat' structures based on other
masks.
Revision 1.8fnielsen 2005/10/20 12:55:52+46 -13
Extended with the menu options.
Revision 1.7fnielsen 2005/10/18 16:14:48+35 -5
Added menu item for spawning a 'mat' structure.
Revision 1.6fnielsen 2005/10/05 13:40:38+41 -2
Added a button for spawning a window with one 'vol' structure.
Revision 1.5fnielsen 2005/09/16 10:50:26+14 -22
Extended the spawn menu with a spawning of a 50% fraction mask.
Revision 1.4fnielsen 2005/08/31 19:09:02+61 -3
Added buttons for visualizations.
Revision 1.3fnielsen 2005/08/29 23:22:46+85 -19
Added new menu items and a list box.
Revision 1.2fnielsen 2005/08/24 20:30:26+15 -5
Minor changes.
Revision 1.1fnielsen 2005/08/18 18:53:10None
Initial version.

Filename: brede_url.m
Revision 1.6fn 2006/11/30 14:40:22+3 -1
Added brede_url_neurotreeid.
Revision 1.5fn 2006/06/21 16:30:41+6 -3
Added functions.
Revision 1.4fnielsen 2005/10/19 13:31:08+4 -2
Added function.
Revision 1.3fnielsen 2004/05/11 18:50:40+6 -4
Added brede_url_cocomacsite.
Revision 1.2fnielsen 2004/04/16 19:02:52+6 -3
Extended help text.
Revision 1.1fnielsen 2004/04/15 16:31:26None
Initial version.

Filename: brede_url_braininfo.m
Revision 1.2fnielsen 2004/05/13 14:25:20+25 -8
Extended help text.
Included some extra code that is not yet enabled.
Revision 1.1fnielsen 2004/03/30 16:27:15None
Initial version.

Filename: brede_url_cocomacsite.m
Revision 1.3fnielsen 2005/10/07 09:42:15+88 -16
Extended with the 'type' property
Revision 1.2fnielsen 2004/05/11 18:51:03+3 -3
Missing semicolon.
Revision 1.1fnielsen 2004/04/07 14:50:17None
Initial version.

Filename: brede_url_doi.m
Revision 1.1fnielsen 2003/02/21 15:29:17None
Initial version.

Filename: brede_url_fmridcid.m
Revision 1.6fnielsen 2005/09/27 18:45:30+6 -1
Update in format from Kevin Mitcham.
Revision 1.5fnielsen 2004/08/18 09:57:34+15 -4
Added 'bib' structures and possible input arguments.
Revision 1.4fnielsen 2003/04/23 13:50:08+2 -2
Missing semicolon at the end of the line.
Revision 1.3fnielsen 2003/04/22 16:19:44+7 -7
Corrected code indentation.
Revision 1.2fnielsen 2003/04/22 16:16:09+15 -5
URL changed to a more compact.
Revision 1.1fnielsen 2002/11/12 11:30:37None
Initial version.

Filename: brede_url_genesymbol.m
Revision 1.4fnielsen 2004/04/18 21:01:17+11 -3
Added GENSAT.
Revision 1.3fnielsen 2004/04/16 19:02:39+20 -5
Added PubGene.
Revision 1.2fnielsen 2004/04/15 16:31:12+13 -4
Added ensembl.
Revision 1.1fnielsen 2003/04/08 16:15:13None
Initial version.

Filename: brede_url_ibvdname.m
Revision 1.1fn 2006/06/21 16:29:54None
Initial version.

Filename: brede_url_meshuid.m
Revision 1.2fnielsen 2004/04/16 12:24:19+6 -3
Extended help text.
Revision 1.1fnielsen 2002/11/25 15:09:59None
Initial version.

Filename: brede_url_neurondbpr.m
Revision 1.2fnielsen 2003/04/08 12:05:20+2 -2
Bugfix: wrong variable.
Revision 1.1fnielsen 2003/04/07 16:39:57None
Initial version.

Filename: brede_url_neurotreeid.m
Revision 1.1fn 2006/11/30 14:39:33None
Initial version.

Filename: brede_url_omim.m
Revision 1.1fnielsen 2003/07/15 18:55:57None
Initial version.

Filename: brede_url_pmid.m
Revision 1.3fnielsen 2002/01/15 14:33:56+5 -2
Bugfix: Did not work for cell arrays of strings.
Revision 1.2fnielsen 2002/01/14 18:11:35+26 -9
Added capability for handling both strings and numbers and PMID.
Revision 1.1fnielsen 2000/12/08 11:47:35None
Initial version.

Filename: brede_url_whoicdten.m
Revision 1.1fnielsen 2002/11/25 15:53:44None
Initial version.

Filename: brede_url_wikipedia.m
Revision 1.3fn 2006/08/15 18:11:27+10 -6
Bugfix: Did not work for cell strings.
Revision 1.2fnielsen 2004/04/13 08:47:52+15 -1
Extention: Now adds a underscore for spaces.
Revision 1.1fnielsen 2004/01/23 14:52:39None
Initial version.

Filename: brede_url_wobib.m
Revision 1.2fn 2009/10/25 17:41:01+2 -2
Changed based for Brede Database.
Revision 1.1fnielsen 2002/11/13 18:22:44None
Initial version.

Filename: brede_url_woexp.m
Revision 1.2fn 2009/10/25 17:41:33+2 -2
Changed based for brede database.
Revision 1.1fnielsen 2002/11/13 18:36:11None
Initial version.

Filename: brede_url_woext.m
Revision 1.2fn 2009/10/25 17:42:05+2 -2
Change base for Brede URL.
Revision 1.1fnielsen 2002/11/26 14:49:40None
Initial version.

Filename: brede_url_woper.m
Revision 1.2fn 2009/10/25 17:42:32+2 -2
Changed base for Brede URL.
Revision 1.1fnielsen 2004/07/09 14:45:52None
Initial version.

Filename: brede_url_woroi.m
Revision 1.2fn 2009/10/25 17:40:29+2 -2
Changed base for Brede URL.
Revision 1.1fnielsen 2004/05/18 17:13:09None
Initial version.

Filename: brede_ut_ismember.m
Revision 1.2fnielsen 2000/04/23 04:43:04+3 -3
Changed the help text.
Revision 1.1fnielsen 1999/06/04 16:24:58None
Initial version

Filename: brede_vhb_bkground.m
Revision 1.1fnielsen 2000/11/27 16:14:19None
Initial version.

Filename: brede_vhb_close.m
Revision 1.1fnielsen 2000/11/27 16:12:55None
Initial version.

Filename: brede_vhb_house.m
Revision 1.2fn 2009/06/29 14:54:42+251 -201
Implemented scale and position.
Revision 1.1fnielsen 2000/11/26 19:59:22None
Renamed from brede_hb_house.m

Filename: brede_vhb_money.m
Revision 1.2fn 2009/06/29 15:19:46+3 -3
Correction in help text.
Revision 1.1fn 2009/06/29 15:19:03None
Initial version.

Filename: brede_vhb_navigate.m
Revision 1.2fn 2009/06/29 23:46:55+3 -2
Added more navigation types.
Revision 1.1fnielsen 2000/11/27 16:10:06None
Initial version.

Filename: brede_vhb_open.m
Revision 1.2fn 2009/06/29 19:53:28+5 -4
Spelling correction, see also expanded.
Revision 1.1fnielsen 2000/11/27 16:08:24None
Initial version.

Filename: brede_vhb_person.m
Revision 1.3fn 2009/06/29 14:44:39+66 -48
Added degrees, scale, position and name.
Revision 1.2fn 2009/06/29 13:41:26+448 -448
Change indentation.
Revision 1.1fnielsen 2000/11/26 20:02:17None
Renamed from brede_hb_person.

Filename: brede_vhb_petscanner.m
Revision 1.2fn 2009/06/29 16:08:01+131 -10
Initial version.
Revision 1.1fn 2009/06/29 15:50:22None
Partly assembled.

Filename: brede_vhb_software.m
Revision 1.1fn 2009/06/29 19:34:36None
Initial version.

Filename: brede_vhb_subjects.m
Revision 1.1fn 2009/06/29 18:08:48None
Initial version.

Filename: brede_vhb_torus.m
Revision 1.1fnielsen 2000/11/27 16:19:10None
Initial version.

Filename: brede_vhb_viewpoint.m
Revision 1.2fn 2009/06/29 17:24:35+9 -1
Added another viewpoint.
Revision 1.1fnielsen 2000/11/27 16:12:09None
Initial version.

Filename: brede_vol.m
Revision 1.19fn 2008/06/30 19:47:07+7 -6
Added brede_vol_add.
Revision 1.18fn 2008/06/30 19:46:04+3 -2
Added brede_vol_vol2vol.
Revision 1.17fn 2008/04/03 14:01:57+33 -13
Added brede_vol_mask and an example.
Revision 1.16fnielsen 2005/10/19 13:03:18+10 -5
Added functions to list.
Revision 1.15fnielsen 2005/10/11 16:12:46+5 -3
Added functions.
Revision 1.14fnielsen 2005/10/04 14:59:29+9 -7
Added brede_vol_origin.
Revision 1.13fnielsen 2005/09/22 15:23:08+6 -3
Added BREDE_VOL_REGISTER, BREDE_UI_VOL.
Revision 1.12fnielsen 2005/07/13 13:52:36+8 -5
Added functions.
Revision 1.11fnielsen 2005/01/06 18:40:56+9 -6
Added function and more description.
Revision 1.10fnielsen 2005/01/05 16:25:43+6 -2
Correction and extension of help text.
Revision 1.9fnielsen 2004/05/28 17:08:17+4 -4
Changed due to renaming of a file.
Revision 1.8fnielsen 2003/11/26 19:19:23+8 -4
Added functions.
Revision 1.7fnielsen 2003/11/12 18:02:16+13 -8
Added some more functions.
Revision 1.6fnielsen 2003/11/10 15:46:03+32 -6
Added description of some of the functions that were missing.
Revision 1.5fnielsen 2003/08/01 13:57:36+6 -4
Added brede_vol_subtract.
Revision 1.4fnielsen 2002/09/18 15:27:28+4 -1
Extended.
Revision 1.3fnielsen 2002/08/23 19:53:55+18 -19
Ajusted the help text.
Revision 1.2fnielsen 2002/01/08 21:01:03+22 -3
Added brede_vol_mat2vol and brede_vol_vol2mat.
Revision 1.1fnielsen 2001/11/12 16:22:17None
Initial version.

Filename: brede_vol_abs.m
Revision 1.1fnielsen 2005/10/19 13:07:06None
Initial version.

Filename: brede_vol_add.m
Revision 1.1fn 2008/06/30 19:46:24None
Initial version.

Filename: brede_vol_and.m
Revision 1.5fnielsen 2005/08/29 22:13:15+4 -4
Major bugfix: Did not work appropriately for two input arguments.
Revision 1.4fnielsen 2005/08/29 20:48:37+9 -3
Bugfix: Used excessive amounts of when used iteratively.
Extended help text.
Revision 1.3fnielsen 2005/07/13 15:03:13+4 -4
Bugfix: setting of description errored.
Revision 1.2fnielsen 2005/07/13 14:52:28+66 -35
Extended to handle cell as input.
Revision 1.1fnielsen 2003/11/12 18:13:34None
Initial version.

Filename: brede_vol_assign2label.m
Revision 1.1fnielsen 2003/09/10 20:45:58None
Initial version.

Filename: brede_vol_binarize.m
Revision 1.3fnielsen 2006/02/14 17:44:50+7 -2
Correction in error message.
Added example in help text.
Revision 1.2fnielsen 2005/10/13 17:27:32+9 -1
Bugfix: Infinite loop if called with a wrong property.
Revision 1.1fnielsen 2003/06/25 00:31:45None
Initial version.

Filename: brede_vol_center.m
Revision 1.2fnielsen 2003/11/24 18:38:13+54 -13
Extended with the output property.
Revision 1.1fnielsen 2000/05/15 23:38:53None
Initial version.

Filename: brede_vol_coactivate.m
Revision 1.4fn 2006/07/17 17:55:15+21 -16
Added to the help text.
Revision 1.3fnielsen 2004/06/02 16:47:09+2 -2
Help text correction.
Revision 1.2fnielsen 2002/10/01 23:31:35+19 -21
Changed to not do SVD.
Revision 1.1fnielsen 2002/09/30 16:40:44None
Initial version.

Filename: brede_vol_density2prob.m
Revision 1.2fn 2008/12/02 17:31:55+64 -15
Implemented the normalize property.
Revision 1.1fnielsen 2002/05/26 18:33:21None
Initial version.

Filename: brede_vol_divide.m
Revision 1.1fnielsen 2005/01/27 19:40:11None
Initial version.

Filename: brede_vol_flood.m
Revision 1.3fnielsen 2005/10/11 15:35:29+4 -4
Bugfix: Did not work if 'volume' field was not a double.
Revision 1.2fnielsen 2003/11/12 18:01:12+53 -46
Now use the mex file implementation.
Revision 1.1fnielsen 2003/11/11 19:00:30None
Initial draft version.

Filename: brede_vol_gencoord.m
Revision 1.14fn 2008/10/07 17:51:38+11 -3
Added ch2 template option.
Revision 1.13fn 2008/06/30 14:02:58+2 -2
Updated see also.
Revision 1.12fn 2008/04/09 19:19:09+2 -2
Edit in help text to get rid of multibyte character.
Revision 1.11fnielsen 2005/06/10 18:02:24+10 -2
Defined new template.
Revision 1.10fnielsen 2002/09/05 13:47:16+19 -13
Added spm99_default_0.004 template.
Revision 1.9fnielsen 2002/08/16 12:36:40+9 -1
Added the spm99_template_0.008 template.
Revision 1.8fnielsen 2002/05/22 17:02:19+36 -19
Changed the template definitions to comply with SPM's definitions.
Revision 1.7fnielsen 2002/02/06 13:45:08+19 -11
Added spm99 as a template.
Revision 1.6fnielsen 2001/06/07 03:25:30+5 -1
Bugfix: Did not work when no arguments were given.
Revision 1.5fnielsen 2001/04/28 17:20:07+100 -6
Extended with template and others.
Revision 1.4fnielsen 2000/10/23 14:29:50+21 -2
Implemented 'Xlimit' property.
Revision 1.3fnielsen 2000/05/29 19:21:01+5 -2
Defined Talairach z-coordinates.
Revision 1.2fnielsen 2000/05/15 19:42:50+9 -7
Changed the default limits and the help text.
Revision 1.1fnielsen 2000/05/12 11:18:47None
Initial version.

Filename: brede_vol_get_voxelvalue.m
Revision 1.1fn 2007/06/12 23:53:58None
Initial version.

Filename: brede_vol_glcm.m
Revision 1.1fnielsen 2005/03/02 15:11:09None
Initial version.

Filename: brede_vol_loc.m
Revision 1.7fnielsen 2004/05/28 16:18:31+6 -217
Depricated: Renamed to brede_vol_vol2loc.
Revision 1.6fnielsen 2004/03/12 01:25:43+3 -3
Bugfix: Did not work if type=cogregion.
Revision 1.5fnielsen 2004/01/22 17:33:19+5 -1
Now sets the 'type' field for the output argument.
Revision 1.4fnielsen 2003/07/31 15:10:39+9 -8
Bugfix: The default value of type was wrong compared to the help text.
Revision 1.3fnielsen 2000/07/28 19:33:27+141 -59
Extended in regards to the 'type' property.
Revision 1.2fnielsen 2000/07/25 19:26:32+45 -15
Bugfix: Did not do the region identification properly for
18-connectivity.
Implemented the 26-connectivity region identification.
Revision 1.1fnielsen 2000/07/19 15:26:18None
Initial checkin.
This version might be buggy since it is 2mm or one voxel wrong in the
y-coordinate compared to SPM99 output.

Filename: brede_vol_mask.m
Revision 1.3fn 2008/03/25 16:35:05+3 -2
Added functions to 'see also'.
Revision 1.2fnielsen 2005/09/16 10:49:34+58 -13
Implemented the Fraction property. Extended the 'info' property.
Revision 1.1fnielsen 2005/08/29 22:13:42None
Initial version.

Filename: brede_vol_mat2vol.m
Revision 1.11fn 2008/03/12 14:51:01+4 -4
Bugfix for octave in conditionals.
Revision 1.10fnielsen 2003/05/22 13:49:09+9 -2
Extended to accept voxelcoords that are transposed.
Revision 1.9fnielsen 2003/02/21 11:58:33+2 -2
Correction of error messages.
Revision 1.8fnielsen 2002/09/18 15:28:45+14 -20
Bugfix.
Revision 1.7fnielsen 2002/05/27 17:39:24+15 -26
Now returns also returns the structure identifier.
Revision 1.6fnielsen 2002/02/06 13:30:10+9 -7
Bugfix/Change: There was a problem in the calculation of the voxelsize
from the coordinates since numerical errors could generate non-unique
voxel sizes even though the did not differ.
Revision 1.5fnielsen 2001/05/29 18:34:54+30 -5
Extended with 'VolumeSize' property for vectorized input.
Revision 1.4fnielsen 2001/04/09 11:44:54+2 -2
Bugfix: origin field was not set properly for y-coordinate.
Revision 1.3fnielsen 2000/10/23 14:48:18+20 -13
Bugfixes.
Revision 1.2fnielsen 2000/07/25 19:28:09+203 -47
Incompatible with old versions: Change the functional interface.
Implemented the 'Origin' and 'VoxelCoord' properties.
Revision 1.1fnielsen 2000/05/31 14:48:16None
Initial version.

Filename: brede_vol_mean.m
Revision 1.3fnielsen 2005/06/08 20:23:11+23 -11
Now copied all Loc structures
Revision 1.2fnielsen 2005/01/07 19:14:36+5 -3
Major error! Did not computed the mean correctly, but summed the first
volume twice.
Revision 1.1fnielsen 2004/08/18 18:58:52None
Initial version.

Filename: brede_vol_mirror.m
Revision 1.3fn 2008/05/07 11:05:40+7 -1
Included example.
Revision 1.2fn 2008/05/07 11:04:08+127 -5
Extension/bugfix to Adjust the bounding box of the volume to fit the
input volume.
Revision 1.1fn 2008/04/15 09:51:39None
Initial version.

Filename: brede_vol_negate.m
Revision 1.1fnielsen 2003/06/25 00:30:41None
Initial version.

Filename: brede_vol_not.m
Revision 1.1fnielsen 2003/11/11 17:25:29None
Initial version.

Filename: brede_vol_or.m
Revision 1.1fnielsen 2005/10/11 15:46:52None
Initial version.

Filename: brede_vol_origin.m
Revision 1.3fn 2009/11/16 20:10:33+2 -2
Correction for cases numerical errors.
Revision 1.2fn 2009/11/16 19:42:11+24 -12
Bugfix: Did not work if 'origin' field was not defined.
Revision 1.1fnielsen 2005/10/04 14:59:19None
Initial version.

Filename: brede_vol_plot_cumdist.m
Revision 1.2fnielsen 2004/06/02 16:45:09+3 -3
Correction in the help text.
Revision 1.1fnielsen 2001/11/12 16:18:38None
Initial version.

Filename: brede_vol_plot_hist.m
Revision 1.2fn 2008/05/05 13:11:31+19 -7
Now ignores inf voxel values.
Revision 1.1fnielsen 2002/09/20 12:50:40None
Initial version.

Filename: brede_vol_plot_roc.m
Revision 1.6fnielsen 2003/09/18 15:45:01+19 -3
Enabled to use matrices as input.
Revision 1.5fnielsen 2003/09/17 18:19:38+2 -1
Changed example in help text.
Revision 1.4fnielsen 2002/11/01 16:03:40+7 -3
Extended and corrected help text.
Revision 1.3fnielsen 2002/10/31 01:08:39+12 -4
Changed line drawing and position of text.
Revision 1.2fnielsen 2002/10/30 22:45:56+58 -22
Bugfix: Area computation was wrong.
Made it faster.
Revision 1.1fnielsen 2002/09/20 16:01:31None
Initial version.

Filename: brede_vol_product.m
Revision 1.1fnielsen 2003/03/30 18:36:20None
Initial version.

Filename: brede_vol_range.m
Revision 1.1fnielsen 2003/11/26 19:17:04None
Initial version.

Filename: brede_vol_regident.m
Revision 1.12fn 2008/04/23 14:42:55+224 -190
Code indentation
Implemented the 'info' property.
Revision 1.11fn 2007/06/07 20:55:41+2 -1
Extension/bugfix: Did not handle NaN voxel well.
Revision 1.10fnielsen 2005/02/04 11:19:01+31 -25
Bugfix: Did not work (perhaps because of change in the Matlab between
versions?)
Unrelated bugfix: Did not work if there were no regions.
Fixed error in help text example.
Revision 1.9fnielsen 2002/05/17 19:35:17+15 -6
Included an example in the header.
Revision 1.8fnielsen 2000/07/28 19:35:08+2 -2
Corrected the help text.
Revision 1.7fnielsen 2000/07/18 16:23:26+23 -27
Profiled and edited faster.
Revision 1.6fnielsen 2000/07/14 20:17:52+58 -25
Working version: Implement 6 and 10 neighbor region identification.
Revision 1.5fnielsen 2000/07/14 18:30:27+62 -47
Still some bugs left.
Revision 1.4fnielsen 2000/07/14 17:04:05+28 -14
Almost working version.
Revision 1.3fnielsen 2000/07/14 16:30:06+73 -98
Working now in two dimensions.
Revision 1.2fnielsen 2000/07/14 15:07:22+40 -4
2D version does not working. (Backing up version before change)
Revision 1.1fnielsen 2000/07/14 12:59:10None
First version: Does not work for 3D-volumes - only for 2D images.

Filename: brede_vol_register.m
Revision 1.1fnielsen 2005/09/22 15:19:29None
Initial version.

Filename: brede_vol_resample.m
Revision 1.6fnielsen 2003/09/12 16:23:19+3 -3
Bugfix: Sat the origin field wrong for the y and z coordinate.
Revision 1.5fnielsen 2003/09/10 20:46:39+34 -1
Added the setup of voxelSize and origin on the output when the
TargetVolume is used.
Revision 1.4fnielsen 2002/07/17 17:12:56+14 -7
Extended the help information.
Revision 1.3fnielsen 2002/01/08 15:45:06+30 -13
Implemented 'method'
Bugfix: Didnot report error in connection with false propertynames.
Revision 1.2fnielsen 2001/05/22 11:44:01+36 -6
Added 'VoxelSize' property.
Revision 1.1fnielsen 2000/05/15 19:34:58None
Initial version.

Filename: brede_vol_scale.m
Revision 1.1fnielsen 2005/07/13 13:51:28None
Initial version.

Filename: brede_vol_smooth.m
Revision 1.9fn 2009/10/15 13:45:32+54 -8
Added the 'neighbor' property.
Revision 1.8fn 2009/10/14 18:00:15+71 -59
Extended with [3 3 1] boxwidth for median filter.
Revision 1.7fn 2008/03/12 14:24:26+81 -88
Added an error messages.
Code indentation.
Revision 1.6fn 2007/12/04 15:28:43+2 -2
Typo in error message.
Revision 1.5fn 2007/12/04 12:18:55+2 -2
Typo in error message.
Revision 1.4fn 2007/10/23 20:19:29+53 -9
Implemented the 'median' type of filter.
Revision 1.3fnielsen 2003/11/28 00:00:04+3 -3
Bugfix: Did not work for certain fwhm values.
Revision 1.2fnielsen 2003/11/24 18:38:59+16 -7
Added the setting of the description field.
Revision 1.1fnielsen 2000/07/28 19:29:28None
Initial checkin. Anisotropic gaussian smoothing not implemented.

Filename: brede_vol_subtract.m
Revision 1.3fn 2008/05/06 08:50:23+8 -4
Now issues a warning if the x-coordinate is different.
Revision 1.2fnielsen 2005/01/27 18:57:45+5 -4
Bugfix: crashed when the description field was not defined.
Revision 1.1fnielsen 2003/08/01 12:35:14None
Initial version.

Filename: brede_vol_threshold.m
Revision 1.8fn 2008/03/25 15:55:43+9 -5
Extended the help text.
Revision 1.7fnielsen 2005/01/07 20:16:38+14 -10
Extended with the '><' threshold type.
Revision 1.6fnielsen 2004/09/24 13:16:50+23 -4
Made check on input argument.
Revision 1.5fnielsen 2004/05/28 17:07:43+5 -4
Changed help text due to name change of brede_vol_loc to brede_vol_vol2loc.
Revision 1.4fnielsen 2003/11/12 18:19:55+13 -2
Now sets the 'description' and 'type' fields
Revision 1.3fnielsen 2002/07/17 17:22:12+29 -8
Bugfix in property parsing
Extended to handle '=' type.
Revision 1.2fnielsen 2000/07/28 19:30:26+3 -3
Corrected a wrong function header in the help text.
Revision 1.1fnielsen 2000/07/19 17:40:47None
Initial version

Filename: brede_vol_twosample.m
Revision 1.3fnielsen 2005/01/07 20:19:00+17 -2
Extended help text with example.
Revision 1.2fnielsen 2005/01/06 18:40:36+8 -7
Minor corrections.
Revision 1.1fnielsen 2004/11/01 14:20:14None
Initial version.

Filename: brede_vol_vol2exp.m
Revision 1.1fnielsen 2002/01/08 21:00:11None
Initial draft.

Filename: brede_vol_vol2loc.m
Revision 1.17fn 2009/09/25 14:18:01+82 -2
Added 'VolTValue' and 'VolZScore' value.
Revision 1.16fn 2009/09/25 11:32:49+7 -1
Added description for the hidden fields 'volpvalue' and 'volpvaluecorrected'.
Revision 1.15fn 2009/03/17 13:27:35+10 -7
Bugfix in 'type'='cogregion'. Did not work before.
Revision 1.14fn 2008/04/23 15:39:42+7 -3
Added a info message.
Revision 1.13fn 2008/04/23 15:16:42+469 -469
Code indentation.
Revision 1.12fn 2008/04/23 14:55:31+49 -20
Added info property.
Revision 1.11fn 2008/04/04 17:55:25+164 -17
Implemented a number of 'min...' types.
Revision 1.10fn 2008/04/03 18:50:06+40 -8
Added 'min' type.
Revision 1.9fn 2007/06/15 17:20:41+42 -2
Implemented sorting.
Revision 1.8fn 2007/06/12 23:50:46+43 -11
Implemented the 'maximaregion' type.
Revision 1.7fn 2007/06/07 20:53:35+16 -8
Bugfix: Did not return the correct mean for a region for some types.
Now pass the 'neighbor' property to the region identification function
(brede_vol_regident).
Now able to handle volumes with NaN.
Correction around nearFilter property.
Revision 1.6fn 2006/06/26 16:51:02+8 -3
Added an error message.
Revision 1.5fnielsen 2006/01/26 15:14:59+5 -5
Corrections in help text.
Revision 1.4fnielsen 2005/07/28 16:53:48+4 -2
Bugfix: Did not work if no maxima was found.
Revision 1.3fnielsen 2004/05/29 23:08:30+42 -23
Implemented with nearfilter property.
Extended with MaxEzRegion.
Revision 1.2fnielsen 2004/05/28 17:07:00+78 -21
Extended with maxeq property.
Now use nearfilter.
Erroneous help text corrected.
Revision 1.1fnielsen 2004/05/28 16:20:30None
Renamed from brede_vol_loc.

Filename: brede_vol_vol2mat.m
Revision 1.14fnielsen 2005/10/20 18:39:11+34 -12
Extended with the 'description' and the 'volumemask' properties.
Revision 1.13fnielsen 2005/07/13 15:08:20+37 -11
Extended with the 'VolumeMask' property.
Revision 1.12fnielsen 2005/01/11 17:43:25+4 -4
Bugfix: Problem with case-sensitivity of 'Rows' property.
Revision 1.11fnielsen 2005/01/07 20:15:46+3 -3
Made the 'rows' property case-sensitive.
Revision 1.10fnielsen 2003/10/03 12:47:26+5 -2
Bugfix: The columns field was set wrong.
Revision 1.9fnielsen 2003/09/19 11:05:00+4 -1
Added an check and error message.
Revision 1.8fnielsen 2003/09/12 17:28:33+13 -2
Implemented another algorithm to find unique coordinates and that does
not permute the coordinates.
Revision 1.7fnielsen 2003/09/10 20:45:28+3 -3
Spelling error in help text.
Revision 1.6fnielsen 2003/09/09 13:08:29+83 -16
Implemented the 'coord' property.
Added filename possibility to the 'description' property.
Revision 1.5fnielsen 2003/03/14 15:28:39+4 -1
Added description field.
Revision 1.4fnielsen 2003/03/14 15:14:45+44 -25
Extended to handle when input 'vol' structures are cell arrays.
Revision 1.3fnielsen 2002/09/18 15:32:39+15 -21
Extended to set the 'columns' field with the voxel coordinates.
Revision 1.2fnielsen 2002/01/08 20:59:41+62 -7
Extended to return different type in the 'rows' field.
Revision 1.1fnielsen 2002/01/03 20:29:16None
Initial version.

Filename: brede_vol_vol2str.m
Revision 1.1fnielsen 2005/08/29 23:24:15None
Initial version.

Filename: brede_vol_vol2sur.m
Revision 1.4fnielsen 2005/10/13 17:46:22+49 -19
Added more help text. Removed part of the example - since it was a draft.
Revision 1.3fnielsen 2003/11/29 01:44:17+61 -11
Added isovalue properties.
Revision 1.2fnielsen 2003/11/28 02:04:56+85 -30
Updated. still draft version.
Revision 1.1fnielsen 2003/11/26 19:16:47None
Initial draft version.

Filename: brede_vol_vol2vol.m
Revision 1.1fn 2008/06/30 19:44:54None
Initial version.

Filename: brede_vol_vol2vrml.m
Revision 1.5fnielsen 2004/05/18 15:30:38+2 -2
Made robust to zero volumes.
Revision 1.4fnielsen 2004/04/02 16:52:20+22 -16
Extended to handle case were the volume is zero.
Revision 1.3fnielsen 2002/11/04 16:36:03+3 -4
Corrected Function synopsis and input argument in help text.
Revision 1.2fnielsen 2002/05/26 19:46:43+2 -2
Lowered the isosurface threshold with 10 eps because the isosurface
function did not work with a single voxel.
Revision 1.1fnielsen 2002/05/14 20:33:28None
Initial version. Mostly taken from brede_vta_volsurf.

Filename: brede_vol_vols2html.m
Revision 1.7fn 2008/04/03 19:20:35+48 -20
Bugfix/change in how the negative/both inteprete the threshold.
Revision 1.6fn 2008/04/03 18:47:41+47 -14
Implemented the 'info' property.
Now also reports the negative peaks.
Revision 1.5fnielsen 2006/02/01 19:21:35+18 -7
Now writes threshold to HTML file
Revision 1.4fnielsen 2005/10/20 18:37:09+57 -11
Implemented the display of description.
Revision 1.3fnielsen 2005/10/20 13:13:50+20 -3
Updated.
Revision 1.2fnielsen 2005/10/20 13:03:24+20 -8
Added the title property.
Revision 1.1fnielsen 2005/10/20 12:55:28None
Initial draft version.

Filename: brede_vol_volumemean.m
Revision 1.3fn 2007/09/21 13:05:17+13 -5
Workaround in connection with zero-volumes.
Revision 1.2fnielsen 2004/10/31 00:34:44+47 -3
Implemented the type property.
Revision 1.1fnielsen 2004/09/30 16:11:31None
Initial draft version.

Filename: brede_vol_xform.m
Revision 1.5fnielsen 2005/07/01 19:51:50+38 -16
Extended with the 'affine' type.
Revision 1.4fnielsen 2005/03/22 20:37:21+55 -15
Changed to be somewhat faster.
Revision 1.3fnielsen 2003/12/01 15:01:39+19 -12
Extended help text.
Enabled more choices for 'Type' property.
Revision 1.2fnielsen 2002/03/04 16:43:15+38 -5
Started implemented new fields.
Revision 1.1fnielsen 2002/02/04 17:35:57None
Initial version.

Filename: brede_vol_zero.m
Revision 1.4fn 2008/03/26 15:21:48+2 -2
Bugfix: Did not work for default input and type=all.
Revision 1.3fn 2008/03/26 14:53:49+3 -4
Erased an item from property that was not implemented yet.
Revision 1.2fn 2008/03/25 17:31:04+33 -12
Bugfix: right0 was not working.
Extended with 'position' property.
Revision 1.1fnielsen 2005/03/23 15:18:06None
Initial version.

Filename: brede_vrml.m
Revision 1.1fn 2007/03/12 09:14:00None
Initial version.

Filename: brede_vrml_faceset.m
Revision 1.4fn 2007/03/12 08:54:51+7 -7
Formatting of help text.
Revision 1.3fnielsen 2000/11/17 15:56:59+34 -11
Extended to handle polygons and wireframes other than triangles.
Revision 1.2fnielsen 1999/05/18 19:53:11+28 -4
Implemented specular color
Revision 1.1fnielsen 1999/05/14 18:56:53None
Initial version

Filename: brede_vrml_open.m
Revision 1.4fnielsen 2000/11/27 14:57:15+15 -10
Bugfix: Did not handle filenames with extension properly
Added a bit more to the help text.
Revision 1.3fnielsen 2000/05/24 11:42:28+8 -3
Updated the help text.
Revision 1.2fnielsen 1999/06/07 19:48:42+3 -3
Bugfix: Did not work.
Revision 1.1fnielsen 1999/05/28 17:22:24None
Initial version

Filename: brede_vrml_strimage.m
Revision 1.11fn 2007/03/12 08:57:57+25 -7
Added example.
Revision 1.10fn 2006/11/09 21:27:26+32 -37
Clean up in code and help text.
Revision 1.9fnielsen 2000/05/24 11:43:36+10 -4
Updated the help text.
Revision 1.8fnielsen 1999/05/28 17:19:02+10 -7
Bugfix in connection with color and transparency.
Revision 1.7fnielsen 1999/05/14 16:05:34+13 -3
Bugfix: BackColor was not handled properly.
Extended with a few more characters.
Revision 1.6fnielsen 1999/01/07 20:36:11+47 -17
Implemented BackColor property.
Revision 1.5fnielsen 1999/01/06 15:50:14+2 -2
Bugfix: transparency didn't work.
Revision 1.4fnielsen 1999/01/04 15:07:48+11 -3
Bugfix: Didn't round of RGB values.
Revision 1.3fnielsen 1998/11/17 14:58:32+8 -1
Bugfix: Now able to handle empty string.
Revision 1.2fnielsen 1998/11/16 14:42:22+35 -6
Exended with 'Color' property.
Revision 1.1fnielsen 1998/11/16 13:20:15None
Initial version

Filename: brede_vrml_text.m
Revision 1.4fn 2007/03/12 09:12:08+16 -3
Addd transparency property.
Revision 1.3fn 2007/03/10 13:48:35+6 -6
Minor formatting of help text.
Revision 1.2fnielsen 2000/11/30 09:09:48+4 -4
Bugfix in connection with scaling.
Revision 1.1fnielsen 2000/11/27 15:25:26None
Initial version.

Filename: brede_vrml_unique.m
Revision 1.2fn 2007/03/12 09:12:30+5 -3
Formatting of help text.
Revision 1.1fnielsen 1999/01/06 12:17:39None
Initial version

Filename: brede_vrml_volplane.m
Revision 1.4fn 2007/03/12 09:12:53+9 -7
Formatting of help text.
Revision 1.3fnielsen 1999/10/22 13:19:32+2 -2
Wrong header text.
Revision 1.2fnielsen 1999/10/08 14:51:17+1 -2
Bug from debugging: An 'image' function called was discarded.
Revision 1.1fnielsen 1999/10/08 14:45:54None
Draft version

Filename: brede_vrml_volsurf.m
Revision 1.3fn 2007/03/12 09:13:14+11 -8
Formatting of help text.
Revision 1.2fnielsen 1999/10/08 14:49:05+31 -2
Added downsampling.
Revision 1.1fnielsen 1999/05/18 19:56:53None
Initial version

Filename: brede_vta.m
Revision 1.10fn 2008/03/12 14:53:30+11 -4
Added functions.
Revision 1.9fn 2008/03/11 22:20:43+10 -3
Added functions.
Revision 1.8fn 2007/12/13 11:06:53+5 -4
Added brede_vta_drury.
Revision 1.7fn 2006/11/09 19:47:24+5 -3
Added function.
Revision 1.6fnielsen 2005/09/05 19:06:49+4 -3
Minor formating of help text.
Revision 1.5fnielsen 2004/03/26 14:38:09+7 -5
Added a function.
Revision 1.4fnielsen 2003/07/22 18:43:47+8 -3
Added links.
Revision 1.3fnielsen 2002/09/18 15:34:30+8 -6
Updated.
Revision 1.2fnielsen 2002/09/05 13:49:24+17 -10
Extended help text.
Revision 1.1fnielsen 2002/05/14 20:37:38None
Initial draft.

Filename: brede_vta_1020elec.m
Revision 1.2fn 2008/03/12 13:28:37+7 -5
Adjustment in help text.
Revision 1.1fnielsen 1999/01/29 13:48:52None
Initial version

Filename: brede_vta_1020slice.m
Revision 1.3fn 2008/03/12 13:26:22+7 -5
Adjustment in help text.
Revision 1.2fnielsen 1999/01/28 20:18:13+27 -6
Implemented 'Sagittal' and 'Transversal' property.
Revision 1.1fnielsen 1999/01/28 15:19:25None
Initial version

Filename: brede_vta_aniview.m
Revision 1.2fn 2008/03/12 12:45:37+5 -3
Adjustment of help text.
Revision 1.1fnielsen 1999/02/09 21:05:01None
Initial version - draft

Filename: brede_vta_axes.m
Revision 1.3fnielsen 2000/05/24 11:43:07+8 -6
Update the help text.
Changed the default color.
Revision 1.2fnielsen 1999/05/12 07:42:15+4 -6
Made the default diffuse color a little darker.
Revision 1.1fnielsen 1999/01/06 15:21:59None
Initial version

Filename: brede_vta_axlabel.m
Revision 1.8fn 2006/11/09 23:14:08+2 -2
Missing semicolon.
Revision 1.7fn 2006/11/09 21:30:29+72 -28
Internal changes in code.
Revision 1.6fnielsen 2002/05/14 17:52:13+5 -5
Changed to zeropad for hexidecimal numbers to cope with FreeWrl.
Revision 1.5fnielsen 2000/05/24 11:44:06+5 -3
Updated the help text.
Revision 1.4fnielsen 1999/01/08 13:36:00+164 -65
Implemented a textured polygon with billboard as labels.
Revision 1.3fnielsen 1999/01/07 20:35:44+11 -5
Changed color on texture.
Revision 1.2fnielsen 1999/01/06 17:12:54+3 -5
Corrected help text.
Revision 1.1fnielsen 1999/01/06 16:14:25None
Initial version

Filename: brede_vta_bib.m
Revision 1.1fnielsen 2002/09/18 14:00:54None
Initial version.

Filename: brede_vta_bkground.m
Revision 1.4fn 2006/11/09 19:31:25+7 -8
Internal code change: change to use varargin.
Revision 1.3fnielsen 2004/03/26 14:38:58+10 -6
Changed format of help text.
Revision 1.2fnielsen 1999/06/07 19:34:26+3 -2
Bugfix for 'skyColor' property and included it in the help text.
Revision 1.1fnielsen 1999/01/25 20:10:42None
Initial version

Filename: brede_vta_brodnum.m
Revision 1.3fnielsen 2000/07/06 18:51:19+5 -5
Corrected the misspelling of the Brodmann name.
Revision 1.2fnielsen 2000/04/27 23:08:08+4 -2
Corrected spelling error in help text.
Revision 1.1fnielsen 2000/04/14 04:25:43None
Initial version. Workable but drafty.

Filename: brede_vta_close.m
Revision 1.2fn 2008/03/11 20:35:30+6 -3
Adjustment in help text.
Revision 1.1fnielsen 1999/06/04 16:17:09None
Initial version

Filename: brede_vta_contour.m
Revision 1.6fnielsen 2000/10/19 22:37:52+113 -87
Implmented 'Position' property.
Disabled the axes.
Revision 1.5fnielsen 1999/01/07 22:35:13+6 -6
Yet another "translation" bug.
Revision 1.4fnielsen 1999/01/07 22:19:45+4 -4
Too many "translation" were written.
Revision 1.3fnielsen 1999/01/07 19:54:55+80 -3
Contours implemented.
Revision 1.2fnielsen 1999/01/06 17:25:25+80 -17
Implemented transversal contour.
Revision 1.1fnielsen 1999/01/05 20:56:42None
Initial version

Filename: brede_vta_dipole.m
Revision 1.2fn 2008/03/12 12:30:31+11 -8
Adjustment of help text.
Revision 1.1fnielsen 1999/01/27 15:13:36None
Draft version

Filename: brede_vta_drury.m
Revision 1.4fn 2007/12/13 11:07:07+3 -3
Minor updates in help text.
Revision 1.3fnielsen 2000/10/03 13:56:43+15 -1
Extended the help text to include a reference to van Essen and Drury.
Revision 1.2fnielsen 1999/06/04 17:14:14+61 -18
Region property implemented
Revision 1.1fnielsen 1999/06/04 13:19:46None
Initial version

Filename: brede_vta_exp.m
Revision 1.3fnielsen 2005/01/05 16:13:07+2 -2
Spelling mistake.
Revision 1.2fnielsen 2003/07/23 20:27:55+14 -5
Added support for the construction of URL anchor from WOEXP.
Revision 1.1fnielsen 2002/09/18 14:03:59None
Initial version.

Filename: brede_vta_grid.m
Revision 1.4fn 2008/03/11 20:37:38+7 -5
Adjustment in the help text.
Revision 1.3fnielsen 1999/01/07 22:17:42+4 -4
Initial version
Revision 1.2fnielsen 1999/01/07 20:38:23+3 -3
Changed the color.
Revision 1.1fnielsen 1999/01/07 19:53:55None
Initial version

Filename: brede_vta_loc.m
Revision 1.9fn 2006/11/09 19:48:12+11 -27
Changed to use brede_loc_loc2coord for finding 'coord' information in
the 'loc' structures.
Revision 1.8fnielsen 2004/03/26 14:20:10+309 -287
Extended to construct a standalone file with frame.
Revision 1.7fnielsen 2004/03/25 18:41:51+22 -10
Extended to handle 'loc' structures with no 'coord' field.
Revision 1.6fnielsen 2003/08/20 15:49:35+105 -68
Implmented TextAboveField.
Changed default color on textabove.
Revision 1.5fnielsen 2003/01/15 15:54:06+65 -30
Implemented proper shadows for sphere and box.
Some internal changes with pointType.
Revision 1.4fnielsen 2002/09/18 14:05:06+23 -4
Bugfix: wrong reading of properties.
Extended to handle cells.
Changed stalk ground to -10cm.
Revision 1.3fnielsen 2002/05/14 20:35:22+35 -8
Changed the default size of the glyphs
Now constructing a URL from the BrainMap identifiers if they are
present and the URL is not already defined.
Revision 1.2fnielsen 2001/04/28 17:27:29+3 -3
Bugfix in connection with shadow color.
Revision 1.1fnielsen 2000/11/17 15:00:39None
Initial version. Copied and edited from brede_vta_point.

Filename: brede_vta_navigate.m
Revision 1.3fn 2006/11/09 20:35:34+4 -2
Changed to add PAN, SLIDE and LOOKAT to the 'type' field of the
NavigateInfo VRML node.
Revision 1.2fnielsen 2004/03/26 14:39:51+8 -79
Changed format of help text.
Erased non-used code.
Revision 1.1fnielsen 1999/01/06 14:54:21None
Initial version

Filename: brede_vta_open.m
Revision 1.7fn 2006/11/09 19:40:38+28 -7
Implemented the 'SkyColor' property.
Revision 1.6fnielsen 2004/03/26 14:38:35+5 -5
Rearranged links to other functions in help text.
Revision 1.5fnielsen 2000/11/17 15:03:54+2 -2
Bugfix: Did not handle filenames with extensions properly.
Revision 1.4fnielsen 2000/10/19 22:38:42+39 -26
Implemented 'style' property.
Revision 1.3fnielsen 2000/05/24 11:41:33+16 -6
Updated the help text.
Revision 1.2fnielsen 1999/06/04 16:18:25+30 -9
Error in help text.
Added code to rotate the Brain (problems with ROUTE)
Revision 1.1fnielsen 1999/05/28 17:23:13None
Initial version

Filename: brede_vta_orientlab.m
Revision 1.2fn 2008/03/12 12:27:43+10 -6
Adjustment of help text.
Revision 1.1fnielsen 1999/01/28 15:20:04None
Initial version

Filename: brede_vta_panmark.m
Revision 1.3fn 2008/03/11 20:33:28+257 -254
Adjustment of help text.
Indentation of code.
Revision 1.2fnielsen 1999/01/28 15:49:10+92 -59
Extended (only to draft version) to hyperlink to wave sound for
explanation of "nasion".
Revision 1.1fnielsen 1999/01/27 14:30:44None
Initial version

Filename: brede_vta_patch.m
Revision 1.1fnielsen 2000/11/17 15:06:22None
Initial version.

Filename: brede_vta_patchwall.m
Revision 1.1fnielsen 2000/11/17 15:56:05None
Initial version.

Filename: brede_vta_point.m
Revision 1.12fn 2008/03/11 20:30:14+689 -695
Adjustment and corrections in help text.
Indentation of code
Internal code changes in reading of properties.
Revision 1.11fnielsen 1999/06/04 16:20:06+5 -5
Bugfixes in connection with URL property.
Changed Color on shadows to emissiveColor.
Revision 1.10fnielsen 1999/06/04 09:24:13+17 -5
Extended to handle cellstring for the URL property.
Revision 1.9fnielsen 1999/05/28 17:18:10+170 -82
EmissiveColor, URL implemented.
Revision 1.8fnielsen 1999/05/10 14:20:50+7 -5
Bugfix: Missing '}' and ']' when there was not 'textabove'
Revision 1.7fnielsen 1999/01/29 14:24:55+18 -3
Extended with 'StalkGround' property.
Revision 1.6fnielsen 1999/01/08 10:19:43+25 -3
Code for parsing of Shadow property.
Revision 1.5fnielsen 1999/01/07 22:55:50+43 -39
implemented better use of USE/DEF in TextAbove
Revision 1.4fnielsen 1999/01/07 22:18:45+265 -43
Extended with shadows and new pointtypes.
Revision 1.3fnielsen 1999/01/06 17:26:20+10 -2
Implemented stalk color.
Revision 1.2fnielsen 1999/01/05 18:50:42+76 -48
Extended with new point type and ability to handle file identifiers.
Revision 1.1fnielsen 1999/01/05 10:42:31None
Renamed from brede_vrml_talpoint.

Filename: brede_vta_ruler.m
Revision 1.6fn 2008/03/11 20:05:19+7 -5
Adjustment of help text.
Revision 1.5fnielsen 2002/05/14 17:53:04+2 -2
Changed to zeropad for hexadecimal numbers to cope with FreeWrl.
Revision 1.4fnielsen 1999/01/28 15:43:00+55 -11
Extended with moveable rulers.
Revision 1.3fnielsen 1999/01/27 14:54:42+11 -2
Partially implemented Planesensors.
Revision 1.2fnielsen 1999/01/25 20:21:08+5 -8
Debugging stuff removed.
Revision 1.1fnielsen 1999/01/25 19:19:36None
Initial version

Filename: brede_vta_sphere.m
Revision 1.2fn 2008/03/11 20:03:03+4 -2
Adjustment of help text.
Revision 1.1fnielsen 1999/01/27 16:04:58None
Initial version

Filename: brede_vta_viewpoint.m
Revision 1.3fnielsen 2004/03/26 14:40:19+8 -81
Changed format of help text.
Revision 1.2fnielsen 1999/01/06 17:11:29+46 -1
Orthograhic viewpoints implemented.
Revision 1.1fnielsen 1999/01/06 14:54:42None
Initial version

Filename: brede_vta_volsurf.m
Revision 1.3fnielsen 2005/09/05 22:34:27+8 -7
Formating of help text.
Revision 1.2fnielsen 2000/11/17 15:02:00+34 -6
Added some property values to make it 'combatible' with
brede_ta3_volsurf.m
Implemented isorelative and isopart.
Revision 1.1fnielsen 2000/10/19 22:37:04None
Initial version.

Filename: brede_web.m
Revision 1.2fn 2008/04/02 12:12:04+4 -2
Added brede_web_wikipedia.
Revision 1.1fnielsen 2004/02/03 11:51:18None
Initial version.

Filename: brede_web_alltheweb.m
Revision 1.3fnielsen 2002/04/04 22:00:08+4 -3
Bugfix: Wrong URL patterns.
Revision 1.2fnielsen 2002/04/04 14:10:25+27 -6
Problem with matching: Changed the matching string.
Revision 1.1fnielsen 2002/02/16 02:03:18None
Initial version.

Filename: brede_web_altavista.m
Revision 1.6fnielsen 2002/08/02 15:31:56+9 -22
Bugfix: string match for number of web-pages did not work for ordinary search.
Revision 1.5fnielsen 2002/08/02 15:00:34+5 -4
Changed matching for 'NoInLinks' because Altavista changed the format
of the page.
Revision 1.4fnielsen 2002/02/25 16:39:41+125 -76
Moved downloading to brede_web_url.
Added NoInLinks
Removed 'Links' from 'output' since the AltaVista return result has
changed
Changed 'Number' to work with change AltaVista formatting.
Revision 1.3fnielsen 2002/02/16 02:05:46+15 -13
Extended and corrected help text.
Revision 1.2fnielsen 2000/04/27 23:09:21+7 -3
Extended the help text.
Revision 1.1fnielsen 2000/03/25 01:54:29None
Renamed from brede_sog_altavista

Filename: brede_web_google.m
Revision 1.5fnielsen 2004/02/03 12:11:41+2 -2
Corrected errorneous help text.
Revision 1.4fnielsen 2004/01/06 11:29:57+43 -37
Updated.
Revision 1.3fnielsen 2003/04/04 01:04:50+13 -5
Changes to handle filetype properly.
Revision 1.2fnielsen 2003/02/12 20:07:41+27 -11
Implemented the filetype property.
Revision 1.1fnielsen 2003/02/11 21:46:39None
Initial version.

Filename: brede_web_pmid.m
Revision 1.14fn 2008/03/12 14:00:28+4 -4
Update in URL to pubmed.
Revision 1.13fnielsen 2005/10/21 12:10:14+42 -6
Added the 'pause' and 'info' property.
Revision 1.12fnielsen 2004/04/05 15:48:31+3 -4
Bugfix: Did not work with 'java' as input to the 'getmethod' property.
Revision 1.11fnielsen 2003/10/03 12:35:40+6 -4
Changed since the return format from PubMed was changed.
Revision 1.10fnielsen 2003/02/13 17:10:00+11 -4
Extended help text.
Revision 1.9fnielsen 2003/01/29 18:36:20+31 -23
Extended to download more than 20.
Revision 1.8fnielsen 2003/01/22 17:56:05+5 -5
Corrected help text.
Revision 1.7fnielsen 2002/08/15 17:40:54+3 -3
Now using an empty string for the getmethod.
Revision 1.6fnielsen 2002/07/28 21:36:49+80 -37
Implemented a vectorized call to pubmed (web request only once for
multiple pmids)
Revision 1.5fnielsen 2002/07/18 21:35:17+15 -12
Help extended.
Revision 1.4fnielsen 2000/12/07 10:26:17+23 -4
Added GetMethod property.
Revision 1.3fnielsen 2000/12/04 15:25:41+22 -2
Implemented the returning of the full text URL if it exists.
Revision 1.2fnielsen 2000/11/30 08:57:10+67 -18
Added the 'bib' output method.
Revision 1.1fnielsen 2000/11/17 16:52:21None
Initial version.

Filename: brede_web_pubmed.m
Revision 1.9fnielsen 2003/05/13 15:14:58+36 -31
Changed not to query the web when the QueryString is output.
Revision 1.8fnielsen 2003/04/03 17:33:15+45 -25
Extended to be able to report the number of items responding to a query.
Revision 1.7fnielsen 2003/01/22 17:58:17+9 -4
Extended help text.
Revision 1.6fnielsen 2003/01/21 22:01:02+29 -6
Added maxretrieval property.
Revision 1.5fnielsen 2002/12/05 00:46:23+7 -7
Changed to use java instead.
Revision 1.4fnielsen 2002/07/28 21:34:33+35 -18
Now using a call to the vectorized version of brede_web_pmid.
Revision 1.3fnielsen 2001/01/09 12:19:41+45 -13
Added the 'QueryString' output method.
Revision 1.2fnielsen 2000/12/07 10:24:30+140 -48
Implemented querying with a Bib struture
Implemented return of a bib structure.
Revision 1.1fnielsen 2000/12/04 15:22:52None
Initial version.

Filename: brede_web_spmmail.m
Revision 1.1fnielsen 2002/01/03 19:01:35None
Initial draft version.

Filename: brede_web_url.m
Revision 1.15fn 2006/03/24 15:34:50+17 -2
Added the info property.
Revision 1.14fnielsen 2004/02/03 12:19:23+2 -2
Bugfix: Did not work in all cases with expecttelnet.
Revision 1.13fnielsen 2004/02/03 11:43:41+24 -12
Extended help text.
Now returns 'type'='web' if a structure is returned.
Revision 1.12fnielsen 2004/01/06 11:44:53+27 -26
Implemented brede_web_url.pl option from getmethod property.
Internal code changes.
Revision 1.11fnielsen 2003/04/14 09:34:17+2 -2
Changed the info to zero (no waitbar displayed).
Revision 1.10fnielsen 2003/03/07 19:59:08+2 -1
Added a drawnow command.
Revision 1.9fnielsen 2003/03/07 01:55:23+173 -131
Extended to be able to download multiple pages.
Extended with 'output' property and output with 'web' structures.
Revision 1.8fnielsen 2003/02/20 19:36:58+37 -13
Changed so an empty string is returned if the response code from the
web-server is not OK.
Revision 1.7fnielsen 2002/08/15 17:40:29+68 -26
Added the ability to pass an empty string to getmethod.
Revision 1.6fnielsen 2001/05/06 15:49:27+10 -2
Updated the help text with some more information about where to download perl modules.
Revision 1.5fnielsen 2001/01/09 12:21:55+30 -6
Changed path handling for the wget program
Escaped ' character in connection with perl download.
Revision 1.4fnielsen 2000/12/04 15:23:54+7 -2
Included an error message if the 'wget' program wasn't found.
Revision 1.3fnielsen 2000/10/18 15:29:33+5 -6
Minor alignment of the help text
Revision 1.2fnielsen 2000/05/02 22:19:48+34 -6
Changed the default method.
Extended the help text.
Minor bugfix: display some text.
Revision 1.1fnielsen 2000/05/03 19:45:15None
Initial version

Filename: brede_web_web2html.m
Revision 1.3fn 2006/04/05 18:49:06+9 -3
Extended to write date.
Revision 1.2fn 2006/03/31 19:27:04+25 -14
Proper implementation of handling of 'text' field.
Revision 1.1fnielsen 2003/03/07 01:53:28None
Initial version. (somewhat draft).

Filename: brede_web_web2mat.m
Revision 1.3fn 2006/03/24 15:29:44+3 -2
Changed to make an explicit path to the perl program.
Revision 1.2fnielsen 2004/02/03 12:08:53+39 -11
Added example.
Added more checks for call of perl program.
Revision 1.1fnielsen 2003/03/07 01:53:44None
Initial version.

Filename: brede_web_web2urls.m
Revision 1.1fnielsen 2004/02/03 11:33:08None
Initial version.

Filename: brede_web_web2web.m
Revision 1.3fn 2006/03/24 15:38:17+32 -4
Implemented the 'info' property.
Revision 1.2fnielsen 2004/02/03 11:36:18+36 -5
Added help example, check on input arguments and extraction of outgoing links
Revision 1.1fnielsen 2003/03/07 01:53:59None
Initial version.

Filename: brede_web_wikipedia.m
Revision 1.2fn 2008/03/28 19:01:50+8 -4
Now deblanking the input argument.
Revision 1.1fn 2008/03/27 20:05:16None
Initial version.

Filename: brede_write.m
Revision 1.6fn 2008/04/02 12:11:17+3 -2
Added brede_write_json.
Revision 1.5fn 2007/06/15 17:20:05+7 -3
Added functions.
Revision 1.4fn 2007/06/12 18:19:46+6 -4
Added brede_write_pov.
Revision 1.3fnielsen 2005/10/05 13:25:24+4 -2
Added brede_write_vol2xml.
Revision 1.2fnielsen 2005/06/30 18:37:19+15 -11
Added brede_write_air and extended description text.
Revision 1.1fnielsen 2004/09/22 13:27:33None
Initial version.

Filename: brede_write_air.m
Revision 1.2fn 2007/06/07 17:19:27+291 -121
Changed to work with ordinary AIR16 files rather than Claus Svarer's type.
Revision 1.1fnielsen 2005/07/01 19:50:26None
Initial version.

Filename: brede_write_analyze.m
Revision 1.18fn 2009/11/16 20:09:18+6 -4
Bugfix around the setting of the origin.
Revision 1.17fn 2008/06/30 19:47:39+2 -2
Minor fix in code.
Revision 1.16fn 2008/02/11 16:15:19+9 -4
Added an error message.
Revision 1.15fn 2007/10/24 13:35:52+307 -295
Implemented origin property.
New indentation of code.
Revision 1.14fnielsen 2006/02/14 17:46:55+2 -2
Correction in help text.
Revision 1.13fnielsen 2005/10/05 13:27:13+7 -1
Bugfix: Could not handle volumes that were just a single slice.
Revision 1.12fnielsen 2005/10/04 09:01:45+11 -3
Included and error message if the 'voxelSize' field was not set.
Revision 1.11fnielsen 2005/09/15 09:08:32+2 -2
Minor bugfix: Would sometimes produced a warning about overflow when
the datatype was 'int16'.
Revision 1.10fnielsen 2005/07/13 16:49:50+20 -8
Implemented the 'offset' and 'scale' property.
Revision 1.9fnielsen 2005/02/03 11:38:27+11 -3
Extended help text.
Revision 1.8fnielsen 2004/12/09 14:09:21+3 -3
Bugfix: Scale and offset property did not work (and is still not
mentioned in the header text documentation).
Revision 1.7fnielsen 2004/09/14 12:48:20+4 -4
Bugfix/Extension: Now deblanks the filename arguments.
Revision 1.6fnielsen 2004/08/24 15:59:12+6 -2
Bugfix: Did not correctly round off the origin field. Previously it
was "floored" when the value was written in the ANALYZE file.
Now also issues a warning it the roundoff is not small.
Revision 1.5fnielsen 2004/08/05 12:52:53+4 -2
Bugfix: Did not produce a correct header when the datatype was byte
and there was no necessary scaling.
Revision 1.4fnielsen 2003/09/12 17:26:51+17 -10
Correction in help text for datatype
Implemented no scaling when it is not necessary for int8.
Revision 1.3fnielsen 2002/10/30 11:59:41+30 -25
Several bugfixes:
Wrong function synopsis in the help text.
Wrong default 'orientation' in the help text.
Did not work when the 'datatype' was 'uint8' and 'uchar'.
Revision 1.2fnielsen 2002/03/01 16:21:58+19 -2
Bugfix in connection with error message.
Revision 1.1fnielsen 2002/02/08 15:34:32None
Initial version.

Filename: brede_write_csv.m
Revision 1.2fn 2009/08/17 08:16:50+69 -21
Implemented writing with 'loc' and implemented the 'filename' property.
Revision 1.1fnielsen 2005/08/29 16:20:06None
Initial version.

Filename: brede_write_dot.m
Revision 1.18fn 2007/01/10 16:34:25+77 -28
Extended with the 'EdgeLabelStyle' property.
Revision 1.17fn 2007/01/09 13:38:11+13 -2
Partial implementation of 'filename' property.
Revision 1.16fnielsen 2006/03/08 23:36:57+25 -3
Implemented EdgeStyle property.
Revision 1.15fnielsen 2004/10/28 12:21:52+17 -5
Extended with the RankDir property.
Revision 1.14fnielsen 2004/08/05 14:09:01+3 -5
The 'concentrate=true' line in the dot file is now disable due to
segmentation fault in a version of dot program.
Revision 1.13fnielsen 2004/05/03 19:20:03+15 -1
Implemented fontsize property.
Revision 1.12fnielsen 2004/04/27 17:11:33+26 -10
Implemented the keyfield property.
Revision 1.11fnielsen 2004/04/13 10:27:11+2 -2
Changed so empty fontnames can be used an properties.
Revision 1.10fnielsen 2004/03/31 12:41:56+47 -6
Implemented the fontname property.
Revision 1.9fnielsen 2004/03/30 16:25:57+5 -3
Extended to handle 'roi' structures'.
Revision 1.8fnielsen 2003/05/13 15:20:17+14 -3
Bugfix in connection with test of square matrix.
Revision 1.7fnielsen 2002/11/25 17:46:22+6 -3
Changed fontsize.
Revision 1.6fnielsen 2002/11/22 18:36:29+16 -8
Added attributes to node and graph.
Revision 1.5fnielsen 2002/11/04 14:24:12+32 -9
Extended to handle Org (woorg) structure.
Revision 1.4fnielsen 2002/11/03 21:55:24+5 -4
Corrected example in help text.
Change output format for "ext" nodes.
Revision 1.3fnielsen 2002/09/09 19:15:18+2 -2
Corrected example in help text.
Revision 1.2fnielsen 2002/08/21 18:52:36+93 -11
Implement square matrices.
Revision 1.1fnielsen 2002/07/26 23:38:50None
Initial version.

Filename: brede_write_json.m
Revision 1.2fn 2008/04/02 12:10:33+4 -2
Description of property.
Revision 1.1fn 2008/03/26 17:36:51None
Initial version.

Filename: brede_write_loc.m
Revision 1.2fnielsen 2005/06/30 18:35:27+5 -5
Minor extension in the help text.
Revision 1.1fnielsen 2004/02/13 17:34:33None
Initial version.

Filename: brede_write_loc2csv.m
Revision 1.2fn 2009/08/17 13:07:04+9 -2
Now outputs 'coord' as three separate columns 'x' 'y' an 'z'.
Revision 1.1fn 2007/06/15 17:22:09None
Initial version.

Filename: brede_write_mat2csv.m
Revision 1.6fn 2008/03/12 14:59:42+3 -3
Bugfix for octave in conditionals.
Revision 1.5fn 2007/10/22 13:56:04+80 -17
Implemented the delimiter, info, newline and rowhead property.
Revision 1.4fn 2006/08/17 10:56:20+16 -8
Bugfix: Did not work if rows and columns fields were structures.
Revision 1.3fnielsen 2005/10/27 11:16:54+2 -2
Bugfix: Did not work when 'filename' property argument contained
capital letters.
Revision 1.2fnielsen 2005/09/15 12:32:59+5 -5
Added a more informative error message.
Revision 1.1fnielsen 2005/08/29 16:14:33None
Initial version.

Filename: brede_write_mricro_roi.m
Revision 1.3fn 2007/11/21 13:35:06+61 -60
Bugfix: Should use uint16 rather than int16 when writing. The bug
resulted in that voxel with large indices could not be written.
New code indentation.
Revision 1.2fnielsen 2005/10/05 14:53:20+2 -2
Bugfix in connection with filename extension.
Revision 1.1fnielsen 2005/10/04 10:29:50None
Initial version.

Filename: brede_write_nuages.m
Revision 1.3fnielsen 2003/01/16 20:21:27+48 -8
Added orthotype property.
Revision 1.2fnielsen 2000/10/19 16:30:11+3 -3
Changed the help example to return an OFF file.
Revision 1.1fnielsen 2000/09/01 11:39:19None
Initial version.

Filename: brede_write_off.m
Revision 1.1fnielsen 2003/11/27 10:55:28None
Initial version.

Filename: brede_write_png.m
Revision 1.5fnielsen 2005/11/14 16:55:09+2 -2
Bugfix: Did not work with the 'wide' sizetype property.
Revision 1.4fnielsen 2005/10/19 12:20:58+12 -9
Bugfix: Could (for some unknown reason) change the current figure handle.
Revision 1.3fnielsen 2005/02/15 19:23:32+8 -5
Slightly changed the size of 'cornercube' printing.
Revision 1.2fnielsen 2004/09/22 15:39:18+28 -11
Implemented the sizetype property.
Revision 1.1fnielsen 2004/09/22 13:27:17None
Initial version.

Filename: brede_write_pov.m
Revision 1.3fn 2007/06/12 19:24:10+6 -3
Added code for transparency.
Revision 1.2fn 2006/03/30 14:54:16+54 -25
Added axes.
Revision 1.1fn 2006/03/22 20:11:22None
Initial version.

Filename: brede_write_strings.m
Revision 1.2fn 2008/02/19 19:20:43+5 -2
Added an error message.
Revision 1.1fnielsen 2003/03/05 02:21:16None
Initial version.

Filename: brede_write_vol2xml.m
Revision 1.1fnielsen 2005/10/05 13:24:12None
Initial version.

Filename: brede_write_xml.m
Revision 1.13fnielsen 2005/10/05 13:26:31+5 -2
Extended to handle XML files with 'vol' structures.
Revision 1.12fnielsen 2004/03/25 18:24:29+3 -1
Extended to handle Locs structure.
Revision 1.11fnielsen 2004/02/10 21:44:32+2 -6
Changed to write number with 6 decimals.
Revision 1.10fnielsen 2004/02/10 19:52:20+2 -2
Bugfix: Did not write negative numbers will small magnitude precisely.
Revision 1.9fnielsen 2003/04/14 22:22:25+11 -1
Added writing of XML version and encoding header
Now able to write empty structures without warning.
Revision 1.8fnielsen 2003/04/11 15:49:01+6 -2
Bugfix: Did not write small numbers with enough precision.
Revision 1.7fnielsen 2003/01/21 09:52:56+12 -1
Expanded to write bibs and exts structures.
Revision 1.6fnielsen 2003/01/16 19:53:09+6 -5
Now exscaping '<' and '>' characters.
Revision 1.5fnielsen 2002/08/03 18:46:54+12 -8
Implemented support for 'loc' structure
Now removing spaces at the end of the field values.
Revision 1.4fnielsen 2002/07/28 21:32:58+33 -6
Extended to write 'bib' structures.
Revision 1.3fnielsen 2002/06/14 15:41:53+20 -3
Changed to write 'Exp' instead of 'Woexp'
Bugfix: Did not handle vectors correctly.
Revision 1.2fnielsen 2002/06/12 20:31:05+3 -2
Bugfix: Could not handle strings in cells.
Revision 1.1fnielsen 2002/06/12 20:16:56None
Initial draft, - only for 'Exp' structures.

Filename: bredx_re_match.c
Revision 1.1fnielsen 2000/09/26 15:21:39None
Finished and renamed from brede_re_match.c

Filename: bredx_re_match.m
Revision 1.1fnielsen 2000/09/26 15:21:15None
Initial version

Filename: bredx_vol_flood.c
Revision 1.1fnielsen 2003/11/12 14:45:22None
Initial version.

Filename: bredx_vol_flood.m
Revision 1.1fnielsen 2003/11/12 14:43:37None
Initial version.


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